from collections import OrderedDict import contextlib from datetime import datetime, time from functools import partial import os from urllib.error import URLError import warnings import numpy as np import pytest import pandas.util._test_decorators as td import pandas as pd from pandas import DataFrame, Index, MultiIndex, Series import pandas._testing as tm @contextlib.contextmanager def ignore_xlrd_time_clock_warning(): """ Context manager to ignore warnings raised by the xlrd library, regarding the deprecation of `time.clock` in Python 3.7. """ with warnings.catch_warnings(): warnings.filterwarnings( action="ignore", message="time.clock has been deprecated", category=DeprecationWarning, ) yield read_ext_params = [".xls", ".xlsx", ".xlsm", ".xlsb", ".ods"] engine_params = [ # Add any engines to test here # When defusedxml is installed it triggers deprecation warnings for # xlrd and openpyxl, so catch those here pytest.param( "xlrd", marks=[ td.skip_if_no("xlrd"), pytest.mark.filterwarnings("ignore:.*(tree\\.iter|html argument)"), ], ), pytest.param( "openpyxl", marks=[ td.skip_if_no("openpyxl"), pytest.mark.filterwarnings("ignore:.*html argument"), ], ), pytest.param( None, marks=[ td.skip_if_no("xlrd"), pytest.mark.filterwarnings("ignore:.*(tree\\.iter|html argument)"), ], ), pytest.param("pyxlsb", marks=td.skip_if_no("pyxlsb")), pytest.param("odf", marks=td.skip_if_no("odf")), ] def _is_valid_engine_ext_pair(engine, read_ext: str) -> bool: """ Filter out invalid (engine, ext) pairs instead of skipping, as that produces 500+ pytest.skips. """ engine = engine.values[0] if engine == "openpyxl" and read_ext == ".xls": return False if engine == "odf" and read_ext != ".ods": return False if read_ext == ".ods" and engine != "odf": return False if engine == "pyxlsb" and read_ext != ".xlsb": return False if read_ext == ".xlsb" and engine != "pyxlsb": return False return True def _transfer_marks(engine, read_ext): """ engine gives us a pytest.param objec with some marks, read_ext is just a string. We need to generate a new pytest.param inheriting the marks. """ values = engine.values + (read_ext,) new_param = pytest.param(values, marks=engine.marks) return new_param @pytest.fixture( autouse=True, params=[ _transfer_marks(eng, ext) for eng in engine_params for ext in read_ext_params if _is_valid_engine_ext_pair(eng, ext) ], ) def engine_and_read_ext(request): """ Fixture for Excel reader engine and read_ext, only including valid pairs. """ return request.param @pytest.fixture def engine(engine_and_read_ext): engine, read_ext = engine_and_read_ext return engine @pytest.fixture def read_ext(engine_and_read_ext): engine, read_ext = engine_and_read_ext return read_ext class TestReaders: @pytest.fixture(autouse=True) def cd_and_set_engine(self, engine, datapath, monkeypatch): """ Change directory and set engine for read_excel calls. """ func = partial(pd.read_excel, engine=engine) monkeypatch.chdir(datapath("io", "data", "excel")) monkeypatch.setattr(pd, "read_excel", func) def test_usecols_int(self, read_ext, df_ref): df_ref = df_ref.reindex(columns=["A", "B", "C"]) # usecols as int msg = "Passing an integer for `usecols`" with pytest.raises(ValueError, match=msg): with ignore_xlrd_time_clock_warning(): pd.read_excel("test1" + read_ext, "Sheet1", index_col=0, usecols=3) # usecols as int with pytest.raises(ValueError, match=msg): with ignore_xlrd_time_clock_warning(): pd.read_excel( "test1" + read_ext, "Sheet2", skiprows=[1], index_col=0, usecols=3 ) def test_usecols_list(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") df_ref = df_ref.reindex(columns=["B", "C"]) df1 = pd.read_excel( "test1" + read_ext, "Sheet1", index_col=0, usecols=[0, 2, 3] ) df2 = pd.read_excel( "test1" + read_ext, "Sheet2", skiprows=[1], index_col=0, usecols=[0, 2, 3] ) # TODO add index to xls file) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) def test_usecols_str(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") df1 = df_ref.reindex(columns=["A", "B", "C"]) df2 = pd.read_excel("test1" + read_ext, "Sheet1", index_col=0, usecols="A:D") df3 = pd.read_excel( "test1" + read_ext, "Sheet2", skiprows=[1], index_col=0, usecols="A:D" ) # TODO add index to xls, read xls ignores index name ? tm.assert_frame_equal(df2, df1, check_names=False) tm.assert_frame_equal(df3, df1, check_names=False) df1 = df_ref.reindex(columns=["B", "C"]) df2 = pd.read_excel("test1" + read_ext, "Sheet1", index_col=0, usecols="A,C,D") df3 = pd.read_excel( "test1" + read_ext, "Sheet2", skiprows=[1], index_col=0, usecols="A,C,D" ) # TODO add index to xls file tm.assert_frame_equal(df2, df1, check_names=False) tm.assert_frame_equal(df3, df1, check_names=False) df1 = df_ref.reindex(columns=["B", "C"]) df2 = pd.read_excel("test1" + read_ext, "Sheet1", index_col=0, usecols="A,C:D") df3 = pd.read_excel( "test1" + read_ext, "Sheet2", skiprows=[1], index_col=0, usecols="A,C:D" ) tm.assert_frame_equal(df2, df1, check_names=False) tm.assert_frame_equal(df3, df1, check_names=False) @pytest.mark.parametrize( "usecols", [[0, 1, 3], [0, 3, 1], [1, 0, 3], [1, 3, 0], [3, 0, 1], [3, 1, 0]] ) def test_usecols_diff_positional_int_columns_order(self, read_ext, usecols, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = df_ref[["A", "C"]] result = pd.read_excel( "test1" + read_ext, "Sheet1", index_col=0, usecols=usecols ) tm.assert_frame_equal(result, expected, check_names=False) @pytest.mark.parametrize("usecols", [["B", "D"], ["D", "B"]]) def test_usecols_diff_positional_str_columns_order(self, read_ext, usecols, df_ref): expected = df_ref[["B", "D"]] expected.index = range(len(expected)) result = pd.read_excel("test1" + read_ext, "Sheet1", usecols=usecols) tm.assert_frame_equal(result, expected, check_names=False) def test_read_excel_without_slicing(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = df_ref result = pd.read_excel("test1" + read_ext, "Sheet1", index_col=0) tm.assert_frame_equal(result, expected, check_names=False) def test_usecols_excel_range_str(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = df_ref[["C", "D"]] result = pd.read_excel( "test1" + read_ext, "Sheet1", index_col=0, usecols="A,D:E" ) tm.assert_frame_equal(result, expected, check_names=False) def test_usecols_excel_range_str_invalid(self, read_ext): msg = "Invalid column name: E1" with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, "Sheet1", usecols="D:E1") def test_index_col_label_error(self, read_ext): msg = "list indices must be integers.*, not str" with pytest.raises(TypeError, match=msg): pd.read_excel( "test1" + read_ext, "Sheet1", index_col=["A"], usecols=["A", "C"] ) def test_index_col_empty(self, read_ext): # see gh-9208 result = pd.read_excel("test1" + read_ext, "Sheet3", index_col=["A", "B", "C"]) expected = DataFrame( columns=["D", "E", "F"], index=MultiIndex(levels=[[]] * 3, codes=[[]] * 3, names=["A", "B", "C"]), ) tm.assert_frame_equal(result, expected) @pytest.mark.parametrize("index_col", [None, 2]) def test_index_col_with_unnamed(self, read_ext, index_col): # see gh-18792 result = pd.read_excel("test1" + read_ext, "Sheet4", index_col=index_col) expected = DataFrame( [["i1", "a", "x"], ["i2", "b", "y"]], columns=["Unnamed: 0", "col1", "col2"] ) if index_col: expected = expected.set_index(expected.columns[index_col]) tm.assert_frame_equal(result, expected) def test_usecols_pass_non_existent_column(self, read_ext): msg = ( "Usecols do not match columns, " "columns expected but not found: " + r"\['E'\]" ) with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, usecols=["E"]) def test_usecols_wrong_type(self, read_ext): msg = ( "'usecols' must either be list-like of " "all strings, all unicode, all integers or a callable." ) with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, usecols=["E1", 0]) def test_excel_stop_iterator(self, read_ext): parsed = pd.read_excel("test2" + read_ext, "Sheet1") expected = DataFrame([["aaaa", "bbbbb"]], columns=["Test", "Test1"]) tm.assert_frame_equal(parsed, expected) def test_excel_cell_error_na(self, read_ext): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") parsed = pd.read_excel("test3" + read_ext, "Sheet1") expected = DataFrame([[np.nan]], columns=["Test"]) tm.assert_frame_equal(parsed, expected) def test_excel_table(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") df1 = pd.read_excel("test1" + read_ext, "Sheet1", index_col=0) df2 = pd.read_excel("test1" + read_ext, "Sheet2", skiprows=[1], index_col=0) # TODO add index to file tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) df3 = pd.read_excel("test1" + read_ext, "Sheet1", index_col=0, skipfooter=1) tm.assert_frame_equal(df3, df1.iloc[:-1]) def test_reader_special_dtypes(self, read_ext): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = DataFrame.from_dict( OrderedDict( [ ("IntCol", [1, 2, -3, 4, 0]), ("FloatCol", [1.25, 2.25, 1.83, 1.92, 0.0000000005]), ("BoolCol", [True, False, True, True, False]), ("StrCol", [1, 2, 3, 4, 5]), # GH5394 - this is why convert_float isn't vectorized ("Str2Col", ["a", 3, "c", "d", "e"]), ( "DateCol", [ datetime(2013, 10, 30), datetime(2013, 10, 31), datetime(1905, 1, 1), datetime(2013, 12, 14), datetime(2015, 3, 14), ], ), ] ) ) basename = "test_types" # should read in correctly and infer types actual = pd.read_excel(basename + read_ext, "Sheet1") tm.assert_frame_equal(actual, expected) # if not coercing number, then int comes in as float float_expected = expected.copy() float_expected["IntCol"] = float_expected["IntCol"].astype(float) float_expected.loc[float_expected.index[1], "Str2Col"] = 3.0 actual = pd.read_excel(basename + read_ext, "Sheet1", convert_float=False) tm.assert_frame_equal(actual, float_expected) # check setting Index (assuming xls and xlsx are the same here) for icol, name in enumerate(expected.columns): actual = pd.read_excel(basename + read_ext, "Sheet1", index_col=icol) exp = expected.set_index(name) tm.assert_frame_equal(actual, exp) # convert_float and converters should be different but both accepted expected["StrCol"] = expected["StrCol"].apply(str) actual = pd.read_excel( basename + read_ext, "Sheet1", converters={"StrCol": str} ) tm.assert_frame_equal(actual, expected) no_convert_float = float_expected.copy() no_convert_float["StrCol"] = no_convert_float["StrCol"].apply(str) actual = pd.read_excel( basename + read_ext, "Sheet1", convert_float=False, converters={"StrCol": str}, ) tm.assert_frame_equal(actual, no_convert_float) # GH8212 - support for converters and missing values def test_reader_converters(self, read_ext): basename = "test_converters" expected = DataFrame.from_dict( OrderedDict( [ ("IntCol", [1, 2, -3, -1000, 0]), ("FloatCol", [12.5, np.nan, 18.3, 19.2, 0.000000005]), ("BoolCol", ["Found", "Found", "Found", "Not found", "Found"]), ("StrCol", ["1", np.nan, "3", "4", "5"]), ] ) ) converters = { "IntCol": lambda x: int(x) if x != "" else -1000, "FloatCol": lambda x: 10 * x if x else np.nan, 2: lambda x: "Found" if x != "" else "Not found", 3: lambda x: str(x) if x else "", } # should read in correctly and set types of single cells (not array # dtypes) actual = pd.read_excel(basename + read_ext, "Sheet1", converters=converters) tm.assert_frame_equal(actual, expected) def test_reader_dtype(self, read_ext): # GH 8212 basename = "testdtype" actual = pd.read_excel(basename + read_ext) expected = DataFrame( { "a": [1, 2, 3, 4], "b": [2.5, 3.5, 4.5, 5.5], "c": [1, 2, 3, 4], "d": [1.0, 2.0, np.nan, 4.0], } ).reindex(columns=["a", "b", "c", "d"]) tm.assert_frame_equal(actual, expected) actual = pd.read_excel( basename + read_ext, dtype={"a": "float64", "b": "float32", "c": str} ) expected["a"] = expected["a"].astype("float64") expected["b"] = expected["b"].astype("float32") expected["c"] = ["001", "002", "003", "004"] tm.assert_frame_equal(actual, expected) with pytest.raises(ValueError): pd.read_excel(basename + read_ext, dtype={"d": "int64"}) @pytest.mark.parametrize( "dtype,expected", [ ( None, DataFrame( { "a": [1, 2, 3, 4], "b": [2.5, 3.5, 4.5, 5.5], "c": [1, 2, 3, 4], "d": [1.0, 2.0, np.nan, 4.0], } ), ), ( {"a": "float64", "b": "float32", "c": str, "d": str}, DataFrame( { "a": Series([1, 2, 3, 4], dtype="float64"), "b": Series([2.5, 3.5, 4.5, 5.5], dtype="float32"), "c": ["001", "002", "003", "004"], "d": ["1", "2", np.nan, "4"], } ), ), ], ) def test_reader_dtype_str(self, read_ext, dtype, expected): # see gh-20377 basename = "testdtype" actual = pd.read_excel(basename + read_ext, dtype=dtype) tm.assert_frame_equal(actual, expected) def test_reading_all_sheets(self, read_ext): # Test reading all sheetnames by setting sheetname to None, # Ensure a dict is returned. # See PR #9450 basename = "test_multisheet" dfs = pd.read_excel(basename + read_ext, sheet_name=None) # ensure this is not alphabetical to test order preservation expected_keys = ["Charlie", "Alpha", "Beta"] tm.assert_contains_all(expected_keys, dfs.keys()) # Issue 9930 # Ensure sheet order is preserved assert expected_keys == list(dfs.keys()) def test_reading_multiple_specific_sheets(self, read_ext): # Test reading specific sheetnames by specifying a mixed list # of integers and strings, and confirm that duplicated sheet # references (positions/names) are removed properly. # Ensure a dict is returned # See PR #9450 basename = "test_multisheet" # Explicitly request duplicates. Only the set should be returned. expected_keys = [2, "Charlie", "Charlie"] dfs = pd.read_excel(basename + read_ext, sheet_name=expected_keys) expected_keys = list(set(expected_keys)) tm.assert_contains_all(expected_keys, dfs.keys()) assert len(expected_keys) == len(dfs.keys()) def test_reading_all_sheets_with_blank(self, read_ext): # Test reading all sheetnames by setting sheetname to None, # In the case where some sheets are blank. # Issue #11711 basename = "blank_with_header" dfs = pd.read_excel(basename + read_ext, sheet_name=None) expected_keys = ["Sheet1", "Sheet2", "Sheet3"] tm.assert_contains_all(expected_keys, dfs.keys()) # GH6403 def test_read_excel_blank(self, read_ext): actual = pd.read_excel("blank" + read_ext, "Sheet1") tm.assert_frame_equal(actual, DataFrame()) def test_read_excel_blank_with_header(self, read_ext): expected = DataFrame(columns=["col_1", "col_2"]) actual = pd.read_excel("blank_with_header" + read_ext, "Sheet1") tm.assert_frame_equal(actual, expected) def test_date_conversion_overflow(self, read_ext): # GH 10001 : pandas.ExcelFile ignore parse_dates=False if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = pd.DataFrame( [ [pd.Timestamp("2016-03-12"), "Marc Johnson"], [pd.Timestamp("2016-03-16"), "Jack Black"], [1e20, "Timothy Brown"], ], columns=["DateColWithBigInt", "StringCol"], ) if pd.read_excel.keywords["engine"] == "openpyxl": pytest.xfail("Maybe not supported by openpyxl") result = pd.read_excel("testdateoverflow" + read_ext) tm.assert_frame_equal(result, expected) def test_sheet_name(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") filename = "test1" sheet_name = "Sheet1" if pd.read_excel.keywords["engine"] == "openpyxl": pytest.xfail("Maybe not supported by openpyxl") df1 = pd.read_excel( filename + read_ext, sheet_name=sheet_name, index_col=0 ) # doc with ignore_xlrd_time_clock_warning(): df2 = pd.read_excel(filename + read_ext, index_col=0, sheet_name=sheet_name) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) def test_excel_read_buffer(self, read_ext): pth = "test1" + read_ext expected = pd.read_excel(pth, "Sheet1", index_col=0) with open(pth, "rb") as f: actual = pd.read_excel(f, "Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) def test_bad_engine_raises(self, read_ext): bad_engine = "foo" with pytest.raises(ValueError, match="Unknown engine: foo"): pd.read_excel("", engine=bad_engine) @tm.network def test_read_from_http_url(self, read_ext): url = ( "https://raw.githubusercontent.com/pandas-dev/pandas/master/" "pandas/tests/io/data/excel/test1" + read_ext ) url_table = pd.read_excel(url) local_table = pd.read_excel("test1" + read_ext) tm.assert_frame_equal(url_table, local_table) @td.skip_if_not_us_locale def test_read_from_s3_url(self, read_ext, s3_resource): # Bucket "pandas-test" created in tests/io/conftest.py with open("test1" + read_ext, "rb") as f: s3_resource.Bucket("pandas-test").put_object(Key="test1" + read_ext, Body=f) url = "s3://pandas-test/test1" + read_ext url_table = pd.read_excel(url) local_table = pd.read_excel("test1" + read_ext) tm.assert_frame_equal(url_table, local_table) @pytest.mark.slow # ignore warning from old xlrd @pytest.mark.filterwarnings("ignore:This metho:PendingDeprecationWarning") def test_read_from_file_url(self, read_ext, datapath): # FILE localtable = os.path.join(datapath("io", "data", "excel"), "test1" + read_ext) local_table = pd.read_excel(localtable) try: url_table = pd.read_excel("file://localhost/" + localtable) except URLError: # fails on some systems import platform pytest.skip("failing on {}".format(" ".join(platform.uname()).strip())) tm.assert_frame_equal(url_table, local_table) def test_read_from_pathlib_path(self, read_ext): # GH12655 from pathlib import Path str_path = "test1" + read_ext expected = pd.read_excel(str_path, "Sheet1", index_col=0) path_obj = Path("test1" + read_ext) actual = pd.read_excel(path_obj, "Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) @td.skip_if_no("py.path") @td.check_file_leaks def test_read_from_py_localpath(self, read_ext): # GH12655 from py.path import local as LocalPath str_path = os.path.join("test1" + read_ext) expected = pd.read_excel(str_path, "Sheet1", index_col=0) path_obj = LocalPath().join("test1" + read_ext) actual = pd.read_excel(path_obj, "Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) @td.check_file_leaks def test_close_from_py_localpath(self, read_ext): # GH31467 str_path = os.path.join("test1" + read_ext) with open(str_path, "rb") as f: x = pd.read_excel(f, "Sheet1", index_col=0) del x # should not throw an exception because the passed file was closed f.read() def test_reader_seconds(self, read_ext): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") # Test reading times with and without milliseconds. GH5945. expected = DataFrame.from_dict( { "Time": [ time(1, 2, 3), time(2, 45, 56, 100000), time(4, 29, 49, 200000), time(6, 13, 42, 300000), time(7, 57, 35, 400000), time(9, 41, 28, 500000), time(11, 25, 21, 600000), time(13, 9, 14, 700000), time(14, 53, 7, 800000), time(16, 37, 0, 900000), time(18, 20, 54), ] } ) actual = pd.read_excel("times_1900" + read_ext, "Sheet1") tm.assert_frame_equal(actual, expected) actual = pd.read_excel("times_1904" + read_ext, "Sheet1") tm.assert_frame_equal(actual, expected) def test_read_excel_multiindex(self, read_ext): # see gh-4679 if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") mi = MultiIndex.from_product([["foo", "bar"], ["a", "b"]]) mi_file = "testmultiindex" + read_ext # "mi_column" sheet expected = DataFrame( [ [1, 2.5, pd.Timestamp("2015-01-01"), True], [2, 3.5, pd.Timestamp("2015-01-02"), False], [3, 4.5, pd.Timestamp("2015-01-03"), False], [4, 5.5, pd.Timestamp("2015-01-04"), True], ], columns=mi, ) actual = pd.read_excel(mi_file, "mi_column", header=[0, 1], index_col=0) tm.assert_frame_equal(actual, expected) # "mi_index" sheet expected.index = mi expected.columns = ["a", "b", "c", "d"] actual = pd.read_excel(mi_file, "mi_index", index_col=[0, 1]) tm.assert_frame_equal(actual, expected, check_names=False) # "both" sheet expected.columns = mi actual = pd.read_excel(mi_file, "both", index_col=[0, 1], header=[0, 1]) tm.assert_frame_equal(actual, expected, check_names=False) # "mi_index_name" sheet expected.columns = ["a", "b", "c", "d"] expected.index = mi.set_names(["ilvl1", "ilvl2"]) actual = pd.read_excel(mi_file, "mi_index_name", index_col=[0, 1]) tm.assert_frame_equal(actual, expected) # "mi_column_name" sheet expected.index = list(range(4)) expected.columns = mi.set_names(["c1", "c2"]) actual = pd.read_excel(mi_file, "mi_column_name", header=[0, 1], index_col=0) tm.assert_frame_equal(actual, expected) # see gh-11317 # "name_with_int" sheet expected.columns = mi.set_levels([1, 2], level=1).set_names(["c1", "c2"]) actual = pd.read_excel(mi_file, "name_with_int", index_col=0, header=[0, 1]) tm.assert_frame_equal(actual, expected) # "both_name" sheet expected.columns = mi.set_names(["c1", "c2"]) expected.index = mi.set_names(["ilvl1", "ilvl2"]) actual = pd.read_excel(mi_file, "both_name", index_col=[0, 1], header=[0, 1]) tm.assert_frame_equal(actual, expected) # "both_skiprows" sheet actual = pd.read_excel( mi_file, "both_name_skiprows", index_col=[0, 1], header=[0, 1], skiprows=2 ) tm.assert_frame_equal(actual, expected) def test_read_excel_multiindex_header_only(self, read_ext): # see gh-11733. # # Don't try to parse a header name if there isn't one. mi_file = "testmultiindex" + read_ext result = pd.read_excel(mi_file, "index_col_none", header=[0, 1]) exp_columns = MultiIndex.from_product([("A", "B"), ("key", "val")]) expected = DataFrame([[1, 2, 3, 4]] * 2, columns=exp_columns) tm.assert_frame_equal(result, expected) def test_excel_old_index_format(self, read_ext): # see gh-4679 filename = "test_index_name_pre17" + read_ext # We detect headers to determine if index names exist, so # that "index" name in the "names" version of the data will # now be interpreted as rows that include null data. data = np.array( [ [None, None, None, None, None], ["R0C0", "R0C1", "R0C2", "R0C3", "R0C4"], ["R1C0", "R1C1", "R1C2", "R1C3", "R1C4"], ["R2C0", "R2C1", "R2C2", "R2C3", "R2C4"], ["R3C0", "R3C1", "R3C2", "R3C3", "R3C4"], ["R4C0", "R4C1", "R4C2", "R4C3", "R4C4"], ] ) columns = ["C_l0_g0", "C_l0_g1", "C_l0_g2", "C_l0_g3", "C_l0_g4"] mi = MultiIndex( levels=[ ["R0", "R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], ["R1", "R_l1_g0", "R_l1_g1", "R_l1_g2", "R_l1_g3", "R_l1_g4"], ], codes=[[0, 1, 2, 3, 4, 5], [0, 1, 2, 3, 4, 5]], names=[None, None], ) si = Index( ["R0", "R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], name=None ) expected = pd.DataFrame(data, index=si, columns=columns) actual = pd.read_excel(filename, "single_names", index_col=0) tm.assert_frame_equal(actual, expected) expected.index = mi actual = pd.read_excel(filename, "multi_names", index_col=[0, 1]) tm.assert_frame_equal(actual, expected) # The analogous versions of the "names" version data # where there are explicitly no names for the indices. data = np.array( [ ["R0C0", "R0C1", "R0C2", "R0C3", "R0C4"], ["R1C0", "R1C1", "R1C2", "R1C3", "R1C4"], ["R2C0", "R2C1", "R2C2", "R2C3", "R2C4"], ["R3C0", "R3C1", "R3C2", "R3C3", "R3C4"], ["R4C0", "R4C1", "R4C2", "R4C3", "R4C4"], ] ) columns = ["C_l0_g0", "C_l0_g1", "C_l0_g2", "C_l0_g3", "C_l0_g4"] mi = MultiIndex( levels=[ ["R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], ["R_l1_g0", "R_l1_g1", "R_l1_g2", "R_l1_g3", "R_l1_g4"], ], codes=[[0, 1, 2, 3, 4], [0, 1, 2, 3, 4]], names=[None, None], ) si = Index(["R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], name=None) expected = pd.DataFrame(data, index=si, columns=columns) actual = pd.read_excel(filename, "single_no_names", index_col=0) tm.assert_frame_equal(actual, expected) expected.index = mi actual = pd.read_excel(filename, "multi_no_names", index_col=[0, 1]) tm.assert_frame_equal(actual, expected, check_names=False) def test_read_excel_bool_header_arg(self, read_ext): # GH 6114 for arg in [True, False]: with pytest.raises(TypeError): pd.read_excel("test1" + read_ext, header=arg) def test_read_excel_chunksize(self, read_ext): # GH 8011 with pytest.raises(NotImplementedError): pd.read_excel("test1" + read_ext, chunksize=100) def test_read_excel_skiprows_list(self, read_ext): # GH 4903 if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") actual = pd.read_excel( "testskiprows" + read_ext, "skiprows_list", skiprows=[0, 2] ) expected = DataFrame( [ [1, 2.5, pd.Timestamp("2015-01-01"), True], [2, 3.5, pd.Timestamp("2015-01-02"), False], [3, 4.5, pd.Timestamp("2015-01-03"), False], [4, 5.5, pd.Timestamp("2015-01-04"), True], ], columns=["a", "b", "c", "d"], ) tm.assert_frame_equal(actual, expected) actual = pd.read_excel( "testskiprows" + read_ext, "skiprows_list", skiprows=np.array([0, 2]) ) tm.assert_frame_equal(actual, expected) def test_read_excel_nrows(self, read_ext): # GH 16645 num_rows_to_pull = 5 actual = pd.read_excel("test1" + read_ext, nrows=num_rows_to_pull) expected = pd.read_excel("test1" + read_ext) expected = expected[:num_rows_to_pull] tm.assert_frame_equal(actual, expected) def test_read_excel_nrows_greater_than_nrows_in_file(self, read_ext): # GH 16645 expected = pd.read_excel("test1" + read_ext) num_records_in_file = len(expected) num_rows_to_pull = num_records_in_file + 10 actual = pd.read_excel("test1" + read_ext, nrows=num_rows_to_pull) tm.assert_frame_equal(actual, expected) def test_read_excel_nrows_non_integer_parameter(self, read_ext): # GH 16645 msg = "'nrows' must be an integer >=0" with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, nrows="5") def test_read_excel_squeeze(self, read_ext): # GH 12157 f = "test_squeeze" + read_ext actual = pd.read_excel(f, "two_columns", index_col=0, squeeze=True) expected = pd.Series([2, 3, 4], [4, 5, 6], name="b") expected.index.name = "a" tm.assert_series_equal(actual, expected) actual = pd.read_excel(f, "two_columns", squeeze=True) expected = pd.DataFrame({"a": [4, 5, 6], "b": [2, 3, 4]}) tm.assert_frame_equal(actual, expected) actual = pd.read_excel(f, "one_column", squeeze=True) expected = pd.Series([1, 2, 3], name="a") tm.assert_series_equal(actual, expected) class TestExcelFileRead: @pytest.fixture(autouse=True) def cd_and_set_engine(self, engine, datapath, monkeypatch): """ Change directory and set engine for ExcelFile objects. """ func = partial(pd.ExcelFile, engine=engine) monkeypatch.chdir(datapath("io", "data", "excel")) monkeypatch.setattr(pd, "ExcelFile", func) def test_excel_passes_na(self, read_ext): with pd.ExcelFile("test4" + read_ext) as excel: parsed = pd.read_excel( excel, "Sheet1", keep_default_na=False, na_values=["apple"] ) expected = DataFrame( [["NA"], [1], ["NA"], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) with pd.ExcelFile("test4" + read_ext) as excel: parsed = pd.read_excel( excel, "Sheet1", keep_default_na=True, na_values=["apple"] ) expected = DataFrame( [[np.nan], [1], [np.nan], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) # 13967 with pd.ExcelFile("test5" + read_ext) as excel: parsed = pd.read_excel( excel, "Sheet1", keep_default_na=False, na_values=["apple"] ) expected = DataFrame( [["1.#QNAN"], [1], ["nan"], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) with pd.ExcelFile("test5" + read_ext) as excel: parsed = pd.read_excel( excel, "Sheet1", keep_default_na=True, na_values=["apple"] ) expected = DataFrame( [[np.nan], [1], [np.nan], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) @pytest.mark.parametrize("na_filter", [None, True, False]) def test_excel_passes_na_filter(self, read_ext, na_filter): # gh-25453 kwargs = {} if na_filter is not None: kwargs["na_filter"] = na_filter with pd.ExcelFile("test5" + read_ext) as excel: parsed = pd.read_excel( excel, "Sheet1", keep_default_na=True, na_values=["apple"], **kwargs ) if na_filter is False: expected = [["1.#QNAN"], [1], ["nan"], ["apple"], ["rabbit"]] else: expected = [[np.nan], [1], [np.nan], [np.nan], ["rabbit"]] expected = DataFrame(expected, columns=["Test"]) tm.assert_frame_equal(parsed, expected) @pytest.mark.parametrize("arg", ["sheet", "sheetname", "parse_cols"]) @td.check_file_leaks def test_unexpected_kwargs_raises(self, read_ext, arg): # gh-17964 kwarg = {arg: "Sheet1"} msg = r"unexpected keyword argument `{}`".format(arg) with pd.ExcelFile("test1" + read_ext) as excel: with pytest.raises(TypeError, match=msg): pd.read_excel(excel, **kwarg) def test_excel_table_sheet_by_index(self, read_ext, df_ref): # For some reason pd.read_excel has no attribute 'keywords' here. # Skipping based on read_ext instead. if read_ext == ".xlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") with pd.ExcelFile("test1" + read_ext) as excel: df1 = pd.read_excel(excel, 0, index_col=0) df2 = pd.read_excel(excel, 1, skiprows=[1], index_col=0) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) with pd.ExcelFile("test1" + read_ext) as excel: df1 = excel.parse(0, index_col=0) df2 = excel.parse(1, skiprows=[1], index_col=0) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) with pd.ExcelFile("test1" + read_ext) as excel: df3 = pd.read_excel(excel, 0, index_col=0, skipfooter=1) tm.assert_frame_equal(df3, df1.iloc[:-1]) with pd.ExcelFile("test1" + read_ext) as excel: df3 = excel.parse(0, index_col=0, skipfooter=1) tm.assert_frame_equal(df3, df1.iloc[:-1]) def test_sheet_name(self, read_ext, df_ref): # For some reason pd.read_excel has no attribute 'keywords' here. # Skipping based on read_ext instead. if read_ext == ".xlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") filename = "test1" sheet_name = "Sheet1" with pd.ExcelFile(filename + read_ext) as excel: df1_parse = excel.parse(sheet_name=sheet_name, index_col=0) # doc with pd.ExcelFile(filename + read_ext) as excel: df2_parse = excel.parse(index_col=0, sheet_name=sheet_name) tm.assert_frame_equal(df1_parse, df_ref, check_names=False) tm.assert_frame_equal(df2_parse, df_ref, check_names=False) def test_excel_read_buffer(self, engine, read_ext): pth = "test1" + read_ext expected = pd.read_excel(pth, "Sheet1", index_col=0, engine=engine) with open(pth, "rb") as f: with pd.ExcelFile(f) as xls: actual = pd.read_excel(xls, "Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) def test_reader_closes_file(self, engine, read_ext): with open("test1" + read_ext, "rb") as f: with pd.ExcelFile(f) as xlsx: # parses okay pd.read_excel(xlsx, "Sheet1", index_col=0, engine=engine) assert f.closed def test_conflicting_excel_engines(self, read_ext): # GH 26566 msg = "Engine should not be specified when passing an ExcelFile" with pd.ExcelFile("test1" + read_ext) as xl: with pytest.raises(ValueError, match=msg): pd.read_excel(xl, engine="foo") def test_excel_read_binary(self, engine, read_ext): # GH 15914 expected = pd.read_excel("test1" + read_ext, engine=engine) with open("test1" + read_ext, "rb") as f: data = f.read() actual = pd.read_excel(data, engine=engine) tm.assert_frame_equal(expected, actual)