// Copyright 2016 Google Inc. // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // Code generated by protoc-gen-go. DO NOT EDIT. // versions: // protoc-gen-go v1.25.0 // protoc v3.13.0 // source: google/genomics/v1/reads.proto package genomics import ( context "context" reflect "reflect" sync "sync" proto "github.com/golang/protobuf/proto" _ "google.golang.org/genproto/googleapis/api/annotations" longrunning "google.golang.org/genproto/googleapis/longrunning" grpc "google.golang.org/grpc" codes "google.golang.org/grpc/codes" status "google.golang.org/grpc/status" protoreflect "google.golang.org/protobuf/reflect/protoreflect" protoimpl "google.golang.org/protobuf/runtime/protoimpl" emptypb "google.golang.org/protobuf/types/known/emptypb" fieldmaskpb "google.golang.org/protobuf/types/known/fieldmaskpb" ) const ( // Verify that this generated code is sufficiently up-to-date. _ = protoimpl.EnforceVersion(20 - protoimpl.MinVersion) // Verify that runtime/protoimpl is sufficiently up-to-date. _ = protoimpl.EnforceVersion(protoimpl.MaxVersion - 20) ) // This is a compile-time assertion that a sufficiently up-to-date version // of the legacy proto package is being used. const _ = proto.ProtoPackageIsVersion4 type ImportReadGroupSetsRequest_PartitionStrategy int32 const ( ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0 // In most cases, this strategy yields one read group set per file. This is // the default behavior. // // Allocate one read group set per file per sample. For BAM files, read // groups are considered to share a sample if they have identical sample // names. Furthermore, all reads for each file which do not belong to a read // group, if any, will be grouped into a single read group set per-file. ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1 // Includes all read groups in all imported files into a single read group // set. Requires that the headers for all imported files are equivalent. All // reads which do not belong to a read group, if any, will be grouped into a // separate read group set. ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2 ) // Enum value maps for ImportReadGroupSetsRequest_PartitionStrategy. var ( ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{ 0: "PARTITION_STRATEGY_UNSPECIFIED", 1: "PER_FILE_PER_SAMPLE", 2: "MERGE_ALL", } ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{ "PARTITION_STRATEGY_UNSPECIFIED": 0, "PER_FILE_PER_SAMPLE": 1, "MERGE_ALL": 2, } ) func (x ImportReadGroupSetsRequest_PartitionStrategy) Enum() *ImportReadGroupSetsRequest_PartitionStrategy { p := new(ImportReadGroupSetsRequest_PartitionStrategy) *p = x return p } func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string { return protoimpl.X.EnumStringOf(x.Descriptor(), protoreflect.EnumNumber(x)) } func (ImportReadGroupSetsRequest_PartitionStrategy) Descriptor() protoreflect.EnumDescriptor { return file_google_genomics_v1_reads_proto_enumTypes[0].Descriptor() } func (ImportReadGroupSetsRequest_PartitionStrategy) Type() protoreflect.EnumType { return &file_google_genomics_v1_reads_proto_enumTypes[0] } func (x ImportReadGroupSetsRequest_PartitionStrategy) Number() protoreflect.EnumNumber { return protoreflect.EnumNumber(x) } // Deprecated: Use ImportReadGroupSetsRequest_PartitionStrategy.Descriptor instead. func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{2, 0} } // The read group set search request. type SearchReadGroupSetsRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // Restricts this query to read group sets within the given datasets. At least // one ID must be provided. DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"` // Only return read group sets for which a substring of the name matches this // string. Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"` // The continuation token, which is used to page through large result sets. // To get the next page of results, set this parameter to the value of // `nextPageToken` from the previous response. PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` // The maximum number of results to return in a single page. If unspecified, // defaults to 256. The maximum value is 1024. PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` } func (x *SearchReadGroupSetsRequest) Reset() { *x = SearchReadGroupSetsRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[0] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *SearchReadGroupSetsRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*SearchReadGroupSetsRequest) ProtoMessage() {} func (x *SearchReadGroupSetsRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[0] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use SearchReadGroupSetsRequest.ProtoReflect.Descriptor instead. func (*SearchReadGroupSetsRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{0} } func (x *SearchReadGroupSetsRequest) GetDatasetIds() []string { if x != nil { return x.DatasetIds } return nil } func (x *SearchReadGroupSetsRequest) GetName() string { if x != nil { return x.Name } return "" } func (x *SearchReadGroupSetsRequest) GetPageToken() string { if x != nil { return x.PageToken } return "" } func (x *SearchReadGroupSetsRequest) GetPageSize() int32 { if x != nil { return x.PageSize } return 0 } // The read group set search response. type SearchReadGroupSetsResponse struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The list of matching read group sets. ReadGroupSets []*ReadGroupSet `protobuf:"bytes,1,rep,name=read_group_sets,json=readGroupSets,proto3" json:"read_group_sets,omitempty"` // The continuation token, which is used to page through large result sets. // Provide this value in a subsequent request to return the next page of // results. This field will be empty if there aren't any additional results. NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` } func (x *SearchReadGroupSetsResponse) Reset() { *x = SearchReadGroupSetsResponse{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[1] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *SearchReadGroupSetsResponse) String() string { return protoimpl.X.MessageStringOf(x) } func (*SearchReadGroupSetsResponse) ProtoMessage() {} func (x *SearchReadGroupSetsResponse) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[1] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use SearchReadGroupSetsResponse.ProtoReflect.Descriptor instead. func (*SearchReadGroupSetsResponse) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{1} } func (x *SearchReadGroupSetsResponse) GetReadGroupSets() []*ReadGroupSet { if x != nil { return x.ReadGroupSets } return nil } func (x *SearchReadGroupSetsResponse) GetNextPageToken() string { if x != nil { return x.NextPageToken } return "" } // The read group set import request. type ImportReadGroupSetsRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // Required. The ID of the dataset these read group sets will belong to. The // caller must have WRITE permissions to this dataset. DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"` // The reference set to which the imported read group sets are aligned to, if // any. The reference names of this reference set must be a superset of those // found in the imported file headers. If no reference set id is provided, a // best effort is made to associate with a matching reference set. ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"` // A list of URIs pointing at [BAM // files](https://samtools.github.io/hts-specs/SAMv1.pdf) // in Google Cloud Storage. // Those URIs can include wildcards (*), but do not add or remove // matching files before import has completed. // // Note that Google Cloud Storage object listing is only eventually // consistent: files added may be not be immediately visible to // everyone. Thus, if using a wildcard it is preferable not to start // the import immediately after the files are created. SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"` // The partition strategy describes how read groups are partitioned into read // group sets. PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `protobuf:"varint,5,opt,name=partition_strategy,json=partitionStrategy,proto3,enum=google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy" json:"partition_strategy,omitempty"` } func (x *ImportReadGroupSetsRequest) Reset() { *x = ImportReadGroupSetsRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[2] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *ImportReadGroupSetsRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*ImportReadGroupSetsRequest) ProtoMessage() {} func (x *ImportReadGroupSetsRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[2] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use ImportReadGroupSetsRequest.ProtoReflect.Descriptor instead. func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{2} } func (x *ImportReadGroupSetsRequest) GetDatasetId() string { if x != nil { return x.DatasetId } return "" } func (x *ImportReadGroupSetsRequest) GetReferenceSetId() string { if x != nil { return x.ReferenceSetId } return "" } func (x *ImportReadGroupSetsRequest) GetSourceUris() []string { if x != nil { return x.SourceUris } return nil } func (x *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy { if x != nil { return x.PartitionStrategy } return ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED } // The read group set import response. type ImportReadGroupSetsResponse struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // IDs of the read group sets that were created. ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"` } func (x *ImportReadGroupSetsResponse) Reset() { *x = ImportReadGroupSetsResponse{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[3] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *ImportReadGroupSetsResponse) String() string { return protoimpl.X.MessageStringOf(x) } func (*ImportReadGroupSetsResponse) ProtoMessage() {} func (x *ImportReadGroupSetsResponse) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[3] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use ImportReadGroupSetsResponse.ProtoReflect.Descriptor instead. func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{3} } func (x *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string { if x != nil { return x.ReadGroupSetIds } return nil } // The read group set export request. type ExportReadGroupSetRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // Required. The Google Cloud project ID that owns this // export. The caller must have WRITE access to this project. ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"` // Required. A Google Cloud Storage URI for the exported BAM file. // The currently authenticated user must have write access to the new file. // An error will be returned if the URI already contains data. ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"` // Required. The ID of the read group set to export. The caller must have // READ access to this read group set. ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` // The reference names to export. If this is not specified, all reference // sequences, including unmapped reads, are exported. // Use `*` to export only unmapped reads. ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"` } func (x *ExportReadGroupSetRequest) Reset() { *x = ExportReadGroupSetRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[4] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *ExportReadGroupSetRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*ExportReadGroupSetRequest) ProtoMessage() {} func (x *ExportReadGroupSetRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[4] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use ExportReadGroupSetRequest.ProtoReflect.Descriptor instead. func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{4} } func (x *ExportReadGroupSetRequest) GetProjectId() string { if x != nil { return x.ProjectId } return "" } func (x *ExportReadGroupSetRequest) GetExportUri() string { if x != nil { return x.ExportUri } return "" } func (x *ExportReadGroupSetRequest) GetReadGroupSetId() string { if x != nil { return x.ReadGroupSetId } return "" } func (x *ExportReadGroupSetRequest) GetReferenceNames() []string { if x != nil { return x.ReferenceNames } return nil } type UpdateReadGroupSetRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The ID of the read group set to be updated. The caller must have WRITE // permissions to the dataset associated with this read group set. ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` // The new read group set data. See `updateMask` for details on mutability of // fields. ReadGroupSet *ReadGroupSet `protobuf:"bytes,2,opt,name=read_group_set,json=readGroupSet,proto3" json:"read_group_set,omitempty"` // An optional mask specifying which fields to update. Supported fields: // // * [name][google.genomics.v1.ReadGroupSet.name]. // * [referenceSetId][google.genomics.v1.ReadGroupSet.reference_set_id]. // // Leaving `updateMask` unset is equivalent to specifying all mutable // fields. UpdateMask *fieldmaskpb.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"` } func (x *UpdateReadGroupSetRequest) Reset() { *x = UpdateReadGroupSetRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[5] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *UpdateReadGroupSetRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*UpdateReadGroupSetRequest) ProtoMessage() {} func (x *UpdateReadGroupSetRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[5] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use UpdateReadGroupSetRequest.ProtoReflect.Descriptor instead. func (*UpdateReadGroupSetRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{5} } func (x *UpdateReadGroupSetRequest) GetReadGroupSetId() string { if x != nil { return x.ReadGroupSetId } return "" } func (x *UpdateReadGroupSetRequest) GetReadGroupSet() *ReadGroupSet { if x != nil { return x.ReadGroupSet } return nil } func (x *UpdateReadGroupSetRequest) GetUpdateMask() *fieldmaskpb.FieldMask { if x != nil { return x.UpdateMask } return nil } type DeleteReadGroupSetRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The ID of the read group set to be deleted. The caller must have WRITE // permissions to the dataset associated with this read group set. ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` } func (x *DeleteReadGroupSetRequest) Reset() { *x = DeleteReadGroupSetRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[6] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *DeleteReadGroupSetRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*DeleteReadGroupSetRequest) ProtoMessage() {} func (x *DeleteReadGroupSetRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[6] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use DeleteReadGroupSetRequest.ProtoReflect.Descriptor instead. func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{6} } func (x *DeleteReadGroupSetRequest) GetReadGroupSetId() string { if x != nil { return x.ReadGroupSetId } return "" } type GetReadGroupSetRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The ID of the read group set. ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` } func (x *GetReadGroupSetRequest) Reset() { *x = GetReadGroupSetRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[7] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *GetReadGroupSetRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*GetReadGroupSetRequest) ProtoMessage() {} func (x *GetReadGroupSetRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[7] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use GetReadGroupSetRequest.ProtoReflect.Descriptor instead. func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{7} } func (x *GetReadGroupSetRequest) GetReadGroupSetId() string { if x != nil { return x.ReadGroupSetId } return "" } type ListCoverageBucketsRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // Required. The ID of the read group set over which coverage is requested. ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` // The name of the reference to query, within the reference set associated // with this query. Optional. ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"` // The start position of the range on the reference, 0-based inclusive. If // specified, `referenceName` must also be specified. Defaults to 0. Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"` // The end position of the range on the reference, 0-based exclusive. If // specified, `referenceName` must also be specified. If unset or 0, defaults // to the length of the reference. End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"` // The desired width of each reported coverage bucket in base pairs. This // will be rounded down to the nearest precomputed bucket width; the value // of which is returned as `bucketWidth` in the response. Defaults // to infinity (each bucket spans an entire reference sequence) or the length // of the target range, if specified. The smallest precomputed // `bucketWidth` is currently 2048 base pairs; this is subject to // change. TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"` // The continuation token, which is used to page through large result sets. // To get the next page of results, set this parameter to the value of // `nextPageToken` from the previous response. PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` // The maximum number of results to return in a single page. If unspecified, // defaults to 1024. The maximum value is 2048. PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` } func (x *ListCoverageBucketsRequest) Reset() { *x = ListCoverageBucketsRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[8] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *ListCoverageBucketsRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*ListCoverageBucketsRequest) ProtoMessage() {} func (x *ListCoverageBucketsRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[8] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use ListCoverageBucketsRequest.ProtoReflect.Descriptor instead. func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{8} } func (x *ListCoverageBucketsRequest) GetReadGroupSetId() string { if x != nil { return x.ReadGroupSetId } return "" } func (x *ListCoverageBucketsRequest) GetReferenceName() string { if x != nil { return x.ReferenceName } return "" } func (x *ListCoverageBucketsRequest) GetStart() int64 { if x != nil { return x.Start } return 0 } func (x *ListCoverageBucketsRequest) GetEnd() int64 { if x != nil { return x.End } return 0 } func (x *ListCoverageBucketsRequest) GetTargetBucketWidth() int64 { if x != nil { return x.TargetBucketWidth } return 0 } func (x *ListCoverageBucketsRequest) GetPageToken() string { if x != nil { return x.PageToken } return "" } func (x *ListCoverageBucketsRequest) GetPageSize() int32 { if x != nil { return x.PageSize } return 0 } // A bucket over which read coverage has been precomputed. A bucket corresponds // to a specific range of the reference sequence. type CoverageBucket struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The genomic coordinate range spanned by this bucket. Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"` // The average number of reads which are aligned to each individual // reference base in this bucket. MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"` } func (x *CoverageBucket) Reset() { *x = CoverageBucket{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[9] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *CoverageBucket) String() string { return protoimpl.X.MessageStringOf(x) } func (*CoverageBucket) ProtoMessage() {} func (x *CoverageBucket) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[9] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use CoverageBucket.ProtoReflect.Descriptor instead. func (*CoverageBucket) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{9} } func (x *CoverageBucket) GetRange() *Range { if x != nil { return x.Range } return nil } func (x *CoverageBucket) GetMeanCoverage() float32 { if x != nil { return x.MeanCoverage } return 0 } type ListCoverageBucketsResponse struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The length of each coverage bucket in base pairs. Note that buckets at the // end of a reference sequence may be shorter. This value is omitted if the // bucket width is infinity (the default behaviour, with no range or // `targetBucketWidth`). BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"` // The coverage buckets. The list of buckets is sparse; a bucket with 0 // overlapping reads is not returned. A bucket never crosses more than one // reference sequence. Each bucket has width `bucketWidth`, unless // its end is the end of the reference sequence. CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"` // The continuation token, which is used to page through large result sets. // Provide this value in a subsequent request to return the next page of // results. This field will be empty if there aren't any additional results. NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` } func (x *ListCoverageBucketsResponse) Reset() { *x = ListCoverageBucketsResponse{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[10] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *ListCoverageBucketsResponse) String() string { return protoimpl.X.MessageStringOf(x) } func (*ListCoverageBucketsResponse) ProtoMessage() {} func (x *ListCoverageBucketsResponse) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[10] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use ListCoverageBucketsResponse.ProtoReflect.Descriptor instead. func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{10} } func (x *ListCoverageBucketsResponse) GetBucketWidth() int64 { if x != nil { return x.BucketWidth } return 0 } func (x *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket { if x != nil { return x.CoverageBuckets } return nil } func (x *ListCoverageBucketsResponse) GetNextPageToken() string { if x != nil { return x.NextPageToken } return "" } // The read search request. type SearchReadsRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The IDs of the read groups sets within which to search for reads. All // specified read group sets must be aligned against a common set of reference // sequences; this defines the genomic coordinates for the query. Must specify // one of `readGroupSetIds` or `readGroupIds`. ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"` // The IDs of the read groups within which to search for reads. All specified // read groups must belong to the same read group sets. Must specify one of // `readGroupSetIds` or `readGroupIds`. ReadGroupIds []string `protobuf:"bytes,5,rep,name=read_group_ids,json=readGroupIds,proto3" json:"read_group_ids,omitempty"` // The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to // `*`, only unmapped reads are returned. If unspecified, all reads (mapped // and unmapped) are returned. ReferenceName string `protobuf:"bytes,7,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"` // The start position of the range on the reference, 0-based inclusive. If // specified, `referenceName` must also be specified. Start int64 `protobuf:"varint,8,opt,name=start,proto3" json:"start,omitempty"` // The end position of the range on the reference, 0-based exclusive. If // specified, `referenceName` must also be specified. End int64 `protobuf:"varint,9,opt,name=end,proto3" json:"end,omitempty"` // The continuation token, which is used to page through large result sets. // To get the next page of results, set this parameter to the value of // `nextPageToken` from the previous response. PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"` // The maximum number of results to return in a single page. If unspecified, // defaults to 256. The maximum value is 2048. PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"` } func (x *SearchReadsRequest) Reset() { *x = SearchReadsRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[11] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *SearchReadsRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*SearchReadsRequest) ProtoMessage() {} func (x *SearchReadsRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[11] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use SearchReadsRequest.ProtoReflect.Descriptor instead. func (*SearchReadsRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{11} } func (x *SearchReadsRequest) GetReadGroupSetIds() []string { if x != nil { return x.ReadGroupSetIds } return nil } func (x *SearchReadsRequest) GetReadGroupIds() []string { if x != nil { return x.ReadGroupIds } return nil } func (x *SearchReadsRequest) GetReferenceName() string { if x != nil { return x.ReferenceName } return "" } func (x *SearchReadsRequest) GetStart() int64 { if x != nil { return x.Start } return 0 } func (x *SearchReadsRequest) GetEnd() int64 { if x != nil { return x.End } return 0 } func (x *SearchReadsRequest) GetPageToken() string { if x != nil { return x.PageToken } return "" } func (x *SearchReadsRequest) GetPageSize() int32 { if x != nil { return x.PageSize } return 0 } // The read search response. type SearchReadsResponse struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The list of matching alignments sorted by mapped genomic coordinate, // if any, ascending in position within the same reference. Unmapped reads, // which have no position, are returned contiguously and are sorted in // ascending lexicographic order by fragment name. Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"` // The continuation token, which is used to page through large result sets. // Provide this value in a subsequent request to return the next page of // results. This field will be empty if there aren't any additional results. NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"` } func (x *SearchReadsResponse) Reset() { *x = SearchReadsResponse{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[12] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *SearchReadsResponse) String() string { return protoimpl.X.MessageStringOf(x) } func (*SearchReadsResponse) ProtoMessage() {} func (x *SearchReadsResponse) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[12] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use SearchReadsResponse.ProtoReflect.Descriptor instead. func (*SearchReadsResponse) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{12} } func (x *SearchReadsResponse) GetAlignments() []*Read { if x != nil { return x.Alignments } return nil } func (x *SearchReadsResponse) GetNextPageToken() string { if x != nil { return x.NextPageToken } return "" } // The stream reads request. type StreamReadsRequest struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields // The Google Cloud project ID which will be billed // for this access. The caller must have WRITE access to this project. // Required. ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"` // The ID of the read group set from which to stream reads. ReadGroupSetId string `protobuf:"bytes,2,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"` // The reference sequence name, for example `chr1`, // `1`, or `chrX`. If set to *, only unmapped reads are // returned. ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"` // The start position of the range on the reference, 0-based inclusive. If // specified, `referenceName` must also be specified. Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"` // The end position of the range on the reference, 0-based exclusive. If // specified, `referenceName` must also be specified. End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"` // Restricts results to a shard containing approximately `1/totalShards` // of the normal response payload for this query. Results from a sharded // request are disjoint from those returned by all queries which differ only // in their shard parameter. A shard may yield 0 results; this is especially // likely for large values of `totalShards`. // // Valid values are `[0, totalShards)`. Shard int32 `protobuf:"varint,6,opt,name=shard,proto3" json:"shard,omitempty"` // Specifying `totalShards` causes a disjoint subset of the normal response // payload to be returned for each query with a unique `shard` parameter // specified. A best effort is made to yield equally sized shards. Sharding // can be used to distribute processing amongst workers, where each worker is // assigned a unique `shard` number and all workers specify the same // `totalShards` number. The union of reads returned for all sharded queries // `[0, totalShards)` is equal to those returned by a single unsharded query. // // Queries for different values of `totalShards` with common divisors will // share shard boundaries. For example, streaming `shard` 2 of 5 // `totalShards` yields the same results as streaming `shard`s 4 and 5 of 10 // `totalShards`. This property can be leveraged for adaptive retries. TotalShards int32 `protobuf:"varint,7,opt,name=total_shards,json=totalShards,proto3" json:"total_shards,omitempty"` } func (x *StreamReadsRequest) Reset() { *x = StreamReadsRequest{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[13] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *StreamReadsRequest) String() string { return protoimpl.X.MessageStringOf(x) } func (*StreamReadsRequest) ProtoMessage() {} func (x *StreamReadsRequest) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[13] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use StreamReadsRequest.ProtoReflect.Descriptor instead. func (*StreamReadsRequest) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{13} } func (x *StreamReadsRequest) GetProjectId() string { if x != nil { return x.ProjectId } return "" } func (x *StreamReadsRequest) GetReadGroupSetId() string { if x != nil { return x.ReadGroupSetId } return "" } func (x *StreamReadsRequest) GetReferenceName() string { if x != nil { return x.ReferenceName } return "" } func (x *StreamReadsRequest) GetStart() int64 { if x != nil { return x.Start } return 0 } func (x *StreamReadsRequest) GetEnd() int64 { if x != nil { return x.End } return 0 } func (x *StreamReadsRequest) GetShard() int32 { if x != nil { return x.Shard } return 0 } func (x *StreamReadsRequest) GetTotalShards() int32 { if x != nil { return x.TotalShards } return 0 } type StreamReadsResponse struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"` } func (x *StreamReadsResponse) Reset() { *x = StreamReadsResponse{} if protoimpl.UnsafeEnabled { mi := &file_google_genomics_v1_reads_proto_msgTypes[14] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } } func (x *StreamReadsResponse) String() string { return protoimpl.X.MessageStringOf(x) } func (*StreamReadsResponse) ProtoMessage() {} func (x *StreamReadsResponse) ProtoReflect() protoreflect.Message { mi := &file_google_genomics_v1_reads_proto_msgTypes[14] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { ms.StoreMessageInfo(mi) } return ms } return mi.MessageOf(x) } // Deprecated: Use StreamReadsResponse.ProtoReflect.Descriptor instead. func (*StreamReadsResponse) Descriptor() ([]byte, []int) { return file_google_genomics_v1_reads_proto_rawDescGZIP(), []int{14} } func (x *StreamReadsResponse) GetAlignments() []*Read { if x != nil { return x.Alignments } return nil } var File_google_genomics_v1_reads_proto protoreflect.FileDescriptor var 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file_google_genomics_v1_reads_proto_rawDescData = protoimpl.X.CompressGZIP(file_google_genomics_v1_reads_proto_rawDescData) }) return file_google_genomics_v1_reads_proto_rawDescData } var file_google_genomics_v1_reads_proto_enumTypes = make([]protoimpl.EnumInfo, 1) var file_google_genomics_v1_reads_proto_msgTypes = make([]protoimpl.MessageInfo, 15) var file_google_genomics_v1_reads_proto_goTypes = []interface{}{ (ImportReadGroupSetsRequest_PartitionStrategy)(0), // 0: google.genomics.v1.ImportReadGroupSetsRequest.PartitionStrategy (*SearchReadGroupSetsRequest)(nil), // 1: google.genomics.v1.SearchReadGroupSetsRequest (*SearchReadGroupSetsResponse)(nil), // 2: google.genomics.v1.SearchReadGroupSetsResponse (*ImportReadGroupSetsRequest)(nil), // 3: google.genomics.v1.ImportReadGroupSetsRequest (*ImportReadGroupSetsResponse)(nil), // 4: google.genomics.v1.ImportReadGroupSetsResponse (*ExportReadGroupSetRequest)(nil), // 5: google.genomics.v1.ExportReadGroupSetRequest (*UpdateReadGroupSetRequest)(nil), // 6: google.genomics.v1.UpdateReadGroupSetRequest (*DeleteReadGroupSetRequest)(nil), // 7: google.genomics.v1.DeleteReadGroupSetRequest (*GetReadGroupSetRequest)(nil), // 8: google.genomics.v1.GetReadGroupSetRequest (*ListCoverageBucketsRequest)(nil), // 9: google.genomics.v1.ListCoverageBucketsRequest (*CoverageBucket)(nil), // 10: google.genomics.v1.CoverageBucket (*ListCoverageBucketsResponse)(nil), // 11: google.genomics.v1.ListCoverageBucketsResponse (*SearchReadsRequest)(nil), // 12: google.genomics.v1.SearchReadsRequest (*SearchReadsResponse)(nil), // 13: google.genomics.v1.SearchReadsResponse (*StreamReadsRequest)(nil), // 14: google.genomics.v1.StreamReadsRequest (*StreamReadsResponse)(nil), // 15: google.genomics.v1.StreamReadsResponse (*ReadGroupSet)(nil), // 16: google.genomics.v1.ReadGroupSet (*fieldmaskpb.FieldMask)(nil), // 17: google.protobuf.FieldMask (*Range)(nil), // 18: google.genomics.v1.Range (*Read)(nil), // 19: google.genomics.v1.Read (*longrunning.Operation)(nil), // 20: google.longrunning.Operation (*emptypb.Empty)(nil), // 21: google.protobuf.Empty } var file_google_genomics_v1_reads_proto_depIdxs = []int32{ 16, // 0: google.genomics.v1.SearchReadGroupSetsResponse.read_group_sets:type_name -> google.genomics.v1.ReadGroupSet 0, // 1: google.genomics.v1.ImportReadGroupSetsRequest.partition_strategy:type_name -> google.genomics.v1.ImportReadGroupSetsRequest.PartitionStrategy 16, // 2: google.genomics.v1.UpdateReadGroupSetRequest.read_group_set:type_name -> google.genomics.v1.ReadGroupSet 17, // 3: google.genomics.v1.UpdateReadGroupSetRequest.update_mask:type_name -> google.protobuf.FieldMask 18, // 4: google.genomics.v1.CoverageBucket.range:type_name -> google.genomics.v1.Range 10, // 5: google.genomics.v1.ListCoverageBucketsResponse.coverage_buckets:type_name -> google.genomics.v1.CoverageBucket 19, // 6: google.genomics.v1.SearchReadsResponse.alignments:type_name -> google.genomics.v1.Read 19, // 7: google.genomics.v1.StreamReadsResponse.alignments:type_name -> google.genomics.v1.Read 14, // 8: google.genomics.v1.StreamingReadService.StreamReads:input_type -> google.genomics.v1.StreamReadsRequest 3, // 9: google.genomics.v1.ReadServiceV1.ImportReadGroupSets:input_type -> google.genomics.v1.ImportReadGroupSetsRequest 5, // 10: google.genomics.v1.ReadServiceV1.ExportReadGroupSet:input_type -> google.genomics.v1.ExportReadGroupSetRequest 1, // 11: google.genomics.v1.ReadServiceV1.SearchReadGroupSets:input_type -> google.genomics.v1.SearchReadGroupSetsRequest 6, // 12: google.genomics.v1.ReadServiceV1.UpdateReadGroupSet:input_type -> google.genomics.v1.UpdateReadGroupSetRequest 7, // 13: google.genomics.v1.ReadServiceV1.DeleteReadGroupSet:input_type -> google.genomics.v1.DeleteReadGroupSetRequest 8, // 14: google.genomics.v1.ReadServiceV1.GetReadGroupSet:input_type -> google.genomics.v1.GetReadGroupSetRequest 9, // 15: google.genomics.v1.ReadServiceV1.ListCoverageBuckets:input_type -> google.genomics.v1.ListCoverageBucketsRequest 12, // 16: google.genomics.v1.ReadServiceV1.SearchReads:input_type -> google.genomics.v1.SearchReadsRequest 15, // 17: google.genomics.v1.StreamingReadService.StreamReads:output_type -> google.genomics.v1.StreamReadsResponse 20, // 18: google.genomics.v1.ReadServiceV1.ImportReadGroupSets:output_type -> google.longrunning.Operation 20, // 19: google.genomics.v1.ReadServiceV1.ExportReadGroupSet:output_type -> google.longrunning.Operation 2, // 20: google.genomics.v1.ReadServiceV1.SearchReadGroupSets:output_type -> google.genomics.v1.SearchReadGroupSetsResponse 16, // 21: google.genomics.v1.ReadServiceV1.UpdateReadGroupSet:output_type -> google.genomics.v1.ReadGroupSet 21, // 22: google.genomics.v1.ReadServiceV1.DeleteReadGroupSet:output_type -> google.protobuf.Empty 16, // 23: google.genomics.v1.ReadServiceV1.GetReadGroupSet:output_type -> google.genomics.v1.ReadGroupSet 11, // 24: google.genomics.v1.ReadServiceV1.ListCoverageBuckets:output_type -> google.genomics.v1.ListCoverageBucketsResponse 13, // 25: google.genomics.v1.ReadServiceV1.SearchReads:output_type -> google.genomics.v1.SearchReadsResponse 17, // [17:26] is the sub-list for method output_type 8, // [8:17] is the sub-list for method input_type 8, // [8:8] is the sub-list for extension type_name 8, // [8:8] is the sub-list for extension extendee 0, // [0:8] is the sub-list for field type_name } func init() { file_google_genomics_v1_reads_proto_init() } func file_google_genomics_v1_reads_proto_init() { if File_google_genomics_v1_reads_proto != nil { return } file_google_genomics_v1_range_proto_init() file_google_genomics_v1_readalignment_proto_init() file_google_genomics_v1_readgroupset_proto_init() if !protoimpl.UnsafeEnabled { file_google_genomics_v1_reads_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*SearchReadGroupSetsRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[1].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*SearchReadGroupSetsResponse); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[2].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*ImportReadGroupSetsRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[3].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*ImportReadGroupSetsResponse); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[4].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*ExportReadGroupSetRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[5].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*UpdateReadGroupSetRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[6].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*DeleteReadGroupSetRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[7].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*GetReadGroupSetRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[8].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*ListCoverageBucketsRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[9].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*CoverageBucket); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[10].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*ListCoverageBucketsResponse); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[11].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*SearchReadsRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[12].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*SearchReadsResponse); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[13].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*StreamReadsRequest); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } file_google_genomics_v1_reads_proto_msgTypes[14].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*StreamReadsResponse); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } } type x struct{} out := protoimpl.TypeBuilder{ File: protoimpl.DescBuilder{ GoPackagePath: reflect.TypeOf(x{}).PkgPath(), RawDescriptor: file_google_genomics_v1_reads_proto_rawDesc, NumEnums: 1, NumMessages: 15, NumExtensions: 0, NumServices: 2, }, GoTypes: file_google_genomics_v1_reads_proto_goTypes, DependencyIndexes: file_google_genomics_v1_reads_proto_depIdxs, EnumInfos: file_google_genomics_v1_reads_proto_enumTypes, MessageInfos: file_google_genomics_v1_reads_proto_msgTypes, }.Build() File_google_genomics_v1_reads_proto = out.File file_google_genomics_v1_reads_proto_rawDesc = nil file_google_genomics_v1_reads_proto_goTypes = nil file_google_genomics_v1_reads_proto_depIdxs = nil } // Reference imports to suppress errors if they are not otherwise used. var _ context.Context var _ grpc.ClientConnInterface // This is a compile-time assertion to ensure that this generated file // is compatible with the grpc package it is being compiled against. const _ = grpc.SupportPackageIsVersion6 // StreamingReadServiceClient is the client API for StreamingReadService service. // // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream. type StreamingReadServiceClient interface { // Returns a stream of all the reads matching the search request, ordered // by reference name, position, and ID. StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error) } type streamingReadServiceClient struct { cc grpc.ClientConnInterface } func NewStreamingReadServiceClient(cc grpc.ClientConnInterface) StreamingReadServiceClient { return &streamingReadServiceClient{cc} } func (c *streamingReadServiceClient) StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error) { stream, err := c.cc.NewStream(ctx, &_StreamingReadService_serviceDesc.Streams[0], "/google.genomics.v1.StreamingReadService/StreamReads", opts...) if err != nil { return nil, err } x := &streamingReadServiceStreamReadsClient{stream} if err := x.ClientStream.SendMsg(in); err != nil { return nil, err } if err := x.ClientStream.CloseSend(); err != nil { return nil, err } return x, nil } type StreamingReadService_StreamReadsClient interface { Recv() (*StreamReadsResponse, error) grpc.ClientStream } type streamingReadServiceStreamReadsClient struct { grpc.ClientStream } func (x *streamingReadServiceStreamReadsClient) Recv() (*StreamReadsResponse, error) { m := new(StreamReadsResponse) if err := x.ClientStream.RecvMsg(m); err != nil { return nil, err } return m, nil } // StreamingReadServiceServer is the server API for StreamingReadService service. type StreamingReadServiceServer interface { // Returns a stream of all the reads matching the search request, ordered // by reference name, position, and ID. StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error } // UnimplementedStreamingReadServiceServer can be embedded to have forward compatible implementations. type UnimplementedStreamingReadServiceServer struct { } func (*UnimplementedStreamingReadServiceServer) StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error { return status.Errorf(codes.Unimplemented, "method StreamReads not implemented") } func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer) { s.RegisterService(&_StreamingReadService_serviceDesc, srv) } func _StreamingReadService_StreamReads_Handler(srv interface{}, stream grpc.ServerStream) error { m := new(StreamReadsRequest) if err := stream.RecvMsg(m); err != nil { return err } return srv.(StreamingReadServiceServer).StreamReads(m, &streamingReadServiceStreamReadsServer{stream}) } type StreamingReadService_StreamReadsServer interface { Send(*StreamReadsResponse) error grpc.ServerStream } type streamingReadServiceStreamReadsServer struct { grpc.ServerStream } func (x *streamingReadServiceStreamReadsServer) Send(m *StreamReadsResponse) error { return x.ServerStream.SendMsg(m) } var _StreamingReadService_serviceDesc = grpc.ServiceDesc{ ServiceName: "google.genomics.v1.StreamingReadService", HandlerType: (*StreamingReadServiceServer)(nil), Methods: []grpc.MethodDesc{}, Streams: []grpc.StreamDesc{ { StreamName: "StreamReads", Handler: _StreamingReadService_StreamReads_Handler, ServerStreams: true, }, }, Metadata: "google/genomics/v1/reads.proto", } // ReadServiceV1Client is the client API for ReadServiceV1 service. // // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream. type ReadServiceV1Client interface { // Creates read group sets by asynchronously importing the provided // information. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // The caller must have WRITE permissions to the dataset. // // ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import // // - Tags will be converted to strings - tag types are not preserved // - Comments (`@CO`) in the input file header will not be preserved // - Original header order of references (`@SQ`) will not be preserved // - Any reverse stranded unmapped reads will be reverse complemented, and // their qualities (also the "BQ" and "OQ" tags, if any) will be reversed // - Unmapped reads will be stripped of positional information (reference name // and position) ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) // Exports a read group set to a BAM file in Google Cloud Storage. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Note that currently there may be some differences between exported BAM // files and the original BAM file at the time of import. See // [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets] // for caveats. ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) // Searches for read group sets matching the criteria. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Implements // [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135). SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error) // Updates a read group set. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // This method supports patch semantics. UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) // Deletes a read group set. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error) // Gets a read group set by ID. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) // Lists fixed width coverage buckets for a read group set, each of which // correspond to a range of a reference sequence. Each bucket summarizes // coverage information across its corresponding genomic range. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Coverage is defined as the number of reads which are aligned to a given // base in the reference sequence. Coverage buckets are available at several // precomputed bucket widths, enabling retrieval of various coverage 'zoom // levels'. The caller must have READ permissions for the target read group // set. ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error) // Gets a list of reads for one or more read group sets. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Reads search operates over a genomic coordinate space of reference sequence // & position defined over the reference sequences to which the requested // read group sets are aligned. // // If a target positional range is specified, search returns all reads whose // alignment to the reference genome overlap the range. A query which // specifies only read group set IDs yields all reads in those read group // sets, including unmapped reads. // // All reads returned (including reads on subsequent pages) are ordered by // genomic coordinate (by reference sequence, then position). Reads with // equivalent genomic coordinates are returned in an unspecified order. This // order is consistent, such that two queries for the same content (regardless // of page size) yield reads in the same order across their respective streams // of paginated responses. // // Implements // [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error) } type readServiceV1Client struct { cc grpc.ClientConnInterface } func NewReadServiceV1Client(cc grpc.ClientConnInterface) ReadServiceV1Client { return &readServiceV1Client{cc} } func (c *readServiceV1Client) ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) { out := new(longrunning.Operation) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) { out := new(longrunning.Operation) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error) { out := new(SearchReadGroupSetsResponse) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) { out := new(ReadGroupSet) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error) { out := new(emptypb.Empty) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) { out := new(ReadGroupSet) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/GetReadGroupSet", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error) { out := new(ListCoverageBucketsResponse) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets", in, out, opts...) if err != nil { return nil, err } return out, nil } func (c *readServiceV1Client) SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error) { out := new(SearchReadsResponse) err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReads", in, out, opts...) if err != nil { return nil, err } return out, nil } // ReadServiceV1Server is the server API for ReadServiceV1 service. type ReadServiceV1Server interface { // Creates read group sets by asynchronously importing the provided // information. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // The caller must have WRITE permissions to the dataset. // // ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import // // - Tags will be converted to strings - tag types are not preserved // - Comments (`@CO`) in the input file header will not be preserved // - Original header order of references (`@SQ`) will not be preserved // - Any reverse stranded unmapped reads will be reverse complemented, and // their qualities (also the "BQ" and "OQ" tags, if any) will be reversed // - Unmapped reads will be stripped of positional information (reference name // and position) ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunning.Operation, error) // Exports a read group set to a BAM file in Google Cloud Storage. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Note that currently there may be some differences between exported BAM // files and the original BAM file at the time of import. See // [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets] // for caveats. ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunning.Operation, error) // Searches for read group sets matching the criteria. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Implements // [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135). SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error) // Updates a read group set. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // This method supports patch semantics. UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error) // Deletes a read group set. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*emptypb.Empty, error) // Gets a read group set by ID. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error) // Lists fixed width coverage buckets for a read group set, each of which // correspond to a range of a reference sequence. Each bucket summarizes // coverage information across its corresponding genomic range. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Coverage is defined as the number of reads which are aligned to a given // base in the reference sequence. Coverage buckets are available at several // precomputed bucket widths, enabling retrieval of various coverage 'zoom // levels'. The caller must have READ permissions for the target read group // set. ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error) // Gets a list of reads for one or more read group sets. // // For the definitions of read group sets and other genomics resources, see // [Fundamentals of Google // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) // // Reads search operates over a genomic coordinate space of reference sequence // & position defined over the reference sequences to which the requested // read group sets are aligned. // // If a target positional range is specified, search returns all reads whose // alignment to the reference genome overlap the range. A query which // specifies only read group set IDs yields all reads in those read group // sets, including unmapped reads. // // All reads returned (including reads on subsequent pages) are ordered by // genomic coordinate (by reference sequence, then position). Reads with // equivalent genomic coordinates are returned in an unspecified order. This // order is consistent, such that two queries for the same content (regardless // of page size) yield reads in the same order across their respective streams // of paginated responses. // // Implements // [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85). SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error) } // UnimplementedReadServiceV1Server can be embedded to have forward compatible implementations. type UnimplementedReadServiceV1Server struct { } func (*UnimplementedReadServiceV1Server) ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunning.Operation, error) { return nil, status.Errorf(codes.Unimplemented, "method ImportReadGroupSets not implemented") } func (*UnimplementedReadServiceV1Server) ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunning.Operation, error) { return nil, status.Errorf(codes.Unimplemented, "method ExportReadGroupSet not implemented") } func (*UnimplementedReadServiceV1Server) SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error) { return nil, status.Errorf(codes.Unimplemented, "method SearchReadGroupSets not implemented") } func (*UnimplementedReadServiceV1Server) UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error) { return nil, status.Errorf(codes.Unimplemented, "method UpdateReadGroupSet not implemented") } func (*UnimplementedReadServiceV1Server) DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*emptypb.Empty, error) { return nil, status.Errorf(codes.Unimplemented, "method DeleteReadGroupSet not implemented") } func (*UnimplementedReadServiceV1Server) GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error) { return nil, status.Errorf(codes.Unimplemented, "method GetReadGroupSet not implemented") } func (*UnimplementedReadServiceV1Server) ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error) { return nil, status.Errorf(codes.Unimplemented, "method ListCoverageBuckets not implemented") } func (*UnimplementedReadServiceV1Server) SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error) { return nil, status.Errorf(codes.Unimplemented, "method SearchReads not implemented") } func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server) { s.RegisterService(&_ReadServiceV1_serviceDesc, srv) } func _ReadServiceV1_ImportReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(ImportReadGroupSetsRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, req.(*ImportReadGroupSetsRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_ExportReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(ExportReadGroupSetRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, req.(*ExportReadGroupSetRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_SearchReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(SearchReadGroupSetsRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, req.(*SearchReadGroupSetsRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_UpdateReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(UpdateReadGroupSetRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, req.(*UpdateReadGroupSetRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_DeleteReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(DeleteReadGroupSetRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, req.(*DeleteReadGroupSetRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_GetReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(GetReadGroupSetRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/GetReadGroupSet", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, req.(*GetReadGroupSetRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_ListCoverageBuckets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(ListCoverageBucketsRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, req.(*ListCoverageBucketsRequest)) } return interceptor(ctx, in, info, handler) } func _ReadServiceV1_SearchReads_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(SearchReadsRequest) if err := dec(in); err != nil { return nil, err } if interceptor == nil { return srv.(ReadServiceV1Server).SearchReads(ctx, in) } info := &grpc.UnaryServerInfo{ Server: srv, FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReads", } handler := func(ctx context.Context, req interface{}) (interface{}, error) { return srv.(ReadServiceV1Server).SearchReads(ctx, req.(*SearchReadsRequest)) } return interceptor(ctx, in, info, handler) } var _ReadServiceV1_serviceDesc = grpc.ServiceDesc{ ServiceName: "google.genomics.v1.ReadServiceV1", HandlerType: (*ReadServiceV1Server)(nil), Methods: []grpc.MethodDesc{ { MethodName: "ImportReadGroupSets", Handler: _ReadServiceV1_ImportReadGroupSets_Handler, }, { MethodName: "ExportReadGroupSet", Handler: _ReadServiceV1_ExportReadGroupSet_Handler, }, { MethodName: "SearchReadGroupSets", Handler: _ReadServiceV1_SearchReadGroupSets_Handler, }, { MethodName: "UpdateReadGroupSet", Handler: _ReadServiceV1_UpdateReadGroupSet_Handler, }, { MethodName: "DeleteReadGroupSet", Handler: _ReadServiceV1_DeleteReadGroupSet_Handler, }, { MethodName: "GetReadGroupSet", Handler: _ReadServiceV1_GetReadGroupSet_Handler, }, { MethodName: "ListCoverageBuckets", Handler: _ReadServiceV1_ListCoverageBuckets_Handler, }, { MethodName: "SearchReads", Handler: _ReadServiceV1_SearchReads_Handler, }, }, Streams: []grpc.StreamDesc{}, Metadata: "google/genomics/v1/reads.proto", }