import contextlib from datetime import datetime, time from functools import partial import os from urllib.error import URLError import warnings import numpy as np import pytest import pandas.util._test_decorators as td import pandas as pd from pandas import DataFrame, Index, MultiIndex, Series import pandas._testing as tm @contextlib.contextmanager def ignore_xlrd_time_clock_warning(): """ Context manager to ignore warnings raised by the xlrd library, regarding the deprecation of `time.clock` in Python 3.7. """ with warnings.catch_warnings(): warnings.filterwarnings( action="ignore", message="time.clock has been deprecated", category=DeprecationWarning, ) yield read_ext_params = [".xls", ".xlsx", ".xlsm", ".xlsb", ".ods"] engine_params = [ # Add any engines to test here # When defusedxml is installed it triggers deprecation warnings for # xlrd and openpyxl, so catch those here pytest.param( "xlrd", marks=[ td.skip_if_no("xlrd"), pytest.mark.filterwarnings("ignore:.*(tree\\.iter|html argument)"), ], ), pytest.param( "openpyxl", marks=[ td.skip_if_no("openpyxl"), pytest.mark.filterwarnings("ignore:.*html argument"), ], ), pytest.param( None, marks=[ td.skip_if_no("xlrd"), pytest.mark.filterwarnings("ignore:.*(tree\\.iter|html argument)"), ], ), pytest.param("pyxlsb", marks=td.skip_if_no("pyxlsb")), pytest.param("odf", marks=td.skip_if_no("odf")), ] def _is_valid_engine_ext_pair(engine, read_ext: str) -> bool: """ Filter out invalid (engine, ext) pairs instead of skipping, as that produces 500+ pytest.skips. """ engine = engine.values[0] if engine == "openpyxl" and read_ext == ".xls": return False if engine == "odf" and read_ext != ".ods": return False if read_ext == ".ods" and engine != "odf": return False if engine == "pyxlsb" and read_ext != ".xlsb": return False if read_ext == ".xlsb" and engine != "pyxlsb": return False return True def _transfer_marks(engine, read_ext): """ engine gives us a pytest.param objec with some marks, read_ext is just a string. We need to generate a new pytest.param inheriting the marks. """ values = engine.values + (read_ext,) new_param = pytest.param(values, marks=engine.marks) return new_param @pytest.fixture( autouse=True, params=[ _transfer_marks(eng, ext) for eng in engine_params for ext in read_ext_params if _is_valid_engine_ext_pair(eng, ext) ], ) def engine_and_read_ext(request): """ Fixture for Excel reader engine and read_ext, only including valid pairs. """ return request.param @pytest.fixture def engine(engine_and_read_ext): engine, read_ext = engine_and_read_ext return engine @pytest.fixture def read_ext(engine_and_read_ext): engine, read_ext = engine_and_read_ext return read_ext class TestReaders: @pytest.fixture(autouse=True) def cd_and_set_engine(self, engine, datapath, monkeypatch): """ Change directory and set engine for read_excel calls. """ func = partial(pd.read_excel, engine=engine) monkeypatch.chdir(datapath("io", "data", "excel")) monkeypatch.setattr(pd, "read_excel", func) def test_usecols_int(self, read_ext, df_ref): df_ref = df_ref.reindex(columns=["A", "B", "C"]) # usecols as int msg = "Passing an integer for `usecols`" with pytest.raises(ValueError, match=msg): with ignore_xlrd_time_clock_warning(): pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols=3 ) # usecols as int with pytest.raises(ValueError, match=msg): with ignore_xlrd_time_clock_warning(): pd.read_excel( "test1" + read_ext, sheet_name="Sheet2", skiprows=[1], index_col=0, usecols=3, ) def test_usecols_list(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") df_ref = df_ref.reindex(columns=["B", "C"]) df1 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols=[0, 2, 3] ) df2 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet2", skiprows=[1], index_col=0, usecols=[0, 2, 3], ) # TODO add index to xls file) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) def test_usecols_str(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") df1 = df_ref.reindex(columns=["A", "B", "C"]) df2 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols="A:D" ) df3 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet2", skiprows=[1], index_col=0, usecols="A:D", ) # TODO add index to xls, read xls ignores index name ? tm.assert_frame_equal(df2, df1, check_names=False) tm.assert_frame_equal(df3, df1, check_names=False) df1 = df_ref.reindex(columns=["B", "C"]) df2 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols="A,C,D" ) df3 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet2", skiprows=[1], index_col=0, usecols="A,C,D", ) # TODO add index to xls file tm.assert_frame_equal(df2, df1, check_names=False) tm.assert_frame_equal(df3, df1, check_names=False) df1 = df_ref.reindex(columns=["B", "C"]) df2 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols="A,C:D" ) df3 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet2", skiprows=[1], index_col=0, usecols="A,C:D", ) tm.assert_frame_equal(df2, df1, check_names=False) tm.assert_frame_equal(df3, df1, check_names=False) @pytest.mark.parametrize( "usecols", [[0, 1, 3], [0, 3, 1], [1, 0, 3], [1, 3, 0], [3, 0, 1], [3, 1, 0]] ) def test_usecols_diff_positional_int_columns_order(self, read_ext, usecols, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = df_ref[["A", "C"]] result = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols=usecols ) tm.assert_frame_equal(result, expected, check_names=False) @pytest.mark.parametrize("usecols", [["B", "D"], ["D", "B"]]) def test_usecols_diff_positional_str_columns_order(self, read_ext, usecols, df_ref): expected = df_ref[["B", "D"]] expected.index = range(len(expected)) result = pd.read_excel("test1" + read_ext, sheet_name="Sheet1", usecols=usecols) tm.assert_frame_equal(result, expected, check_names=False) def test_read_excel_without_slicing(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = df_ref result = pd.read_excel("test1" + read_ext, sheet_name="Sheet1", index_col=0) tm.assert_frame_equal(result, expected, check_names=False) def test_usecols_excel_range_str(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = df_ref[["C", "D"]] result = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, usecols="A,D:E" ) tm.assert_frame_equal(result, expected, check_names=False) def test_usecols_excel_range_str_invalid(self, read_ext): msg = "Invalid column name: E1" with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, sheet_name="Sheet1", usecols="D:E1") def test_index_col_label_error(self, read_ext): msg = "list indices must be integers.*, not str" with pytest.raises(TypeError, match=msg): pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=["A"], usecols=["A", "C"], ) def test_index_col_empty(self, read_ext): # see gh-9208 result = pd.read_excel( "test1" + read_ext, sheet_name="Sheet3", index_col=["A", "B", "C"] ) expected = DataFrame( columns=["D", "E", "F"], index=MultiIndex(levels=[[]] * 3, codes=[[]] * 3, names=["A", "B", "C"]), ) tm.assert_frame_equal(result, expected) @pytest.mark.parametrize("index_col", [None, 2]) def test_index_col_with_unnamed(self, read_ext, index_col): # see gh-18792 result = pd.read_excel( "test1" + read_ext, sheet_name="Sheet4", index_col=index_col ) expected = DataFrame( [["i1", "a", "x"], ["i2", "b", "y"]], columns=["Unnamed: 0", "col1", "col2"] ) if index_col: expected = expected.set_index(expected.columns[index_col]) tm.assert_frame_equal(result, expected) def test_usecols_pass_non_existent_column(self, read_ext): msg = ( "Usecols do not match columns, " "columns expected but not found: " + r"\['E'\]" ) with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, usecols=["E"]) def test_usecols_wrong_type(self, read_ext): msg = ( "'usecols' must either be list-like of " "all strings, all unicode, all integers or a callable." ) with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, usecols=["E1", 0]) def test_excel_stop_iterator(self, read_ext): parsed = pd.read_excel("test2" + read_ext, sheet_name="Sheet1") expected = DataFrame([["aaaa", "bbbbb"]], columns=["Test", "Test1"]) tm.assert_frame_equal(parsed, expected) def test_excel_cell_error_na(self, read_ext): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") parsed = pd.read_excel("test3" + read_ext, sheet_name="Sheet1") expected = DataFrame([[np.nan]], columns=["Test"]) tm.assert_frame_equal(parsed, expected) def test_excel_table(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") df1 = pd.read_excel("test1" + read_ext, sheet_name="Sheet1", index_col=0) df2 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet2", skiprows=[1], index_col=0 ) # TODO add index to file tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) df3 = pd.read_excel( "test1" + read_ext, sheet_name="Sheet1", index_col=0, skipfooter=1 ) tm.assert_frame_equal(df3, df1.iloc[:-1]) def test_reader_special_dtypes(self, read_ext): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = DataFrame.from_dict( { "IntCol": [1, 2, -3, 4, 0], "FloatCol": [1.25, 2.25, 1.83, 1.92, 0.0000000005], "BoolCol": [True, False, True, True, False], "StrCol": [1, 2, 3, 4, 5], # GH5394 - this is why convert_float isn't vectorized "Str2Col": ["a", 3, "c", "d", "e"], "DateCol": [ datetime(2013, 10, 30), datetime(2013, 10, 31), datetime(1905, 1, 1), datetime(2013, 12, 14), datetime(2015, 3, 14), ], }, ) basename = "test_types" # should read in correctly and infer types actual = pd.read_excel(basename + read_ext, sheet_name="Sheet1") tm.assert_frame_equal(actual, expected) # if not coercing number, then int comes in as float float_expected = expected.copy() float_expected["IntCol"] = float_expected["IntCol"].astype(float) float_expected.loc[float_expected.index[1], "Str2Col"] = 3.0 actual = pd.read_excel( basename + read_ext, sheet_name="Sheet1", convert_float=False ) tm.assert_frame_equal(actual, float_expected) # check setting Index (assuming xls and xlsx are the same here) for icol, name in enumerate(expected.columns): actual = pd.read_excel( basename + read_ext, sheet_name="Sheet1", index_col=icol ) exp = expected.set_index(name) tm.assert_frame_equal(actual, exp) # convert_float and converters should be different but both accepted expected["StrCol"] = expected["StrCol"].apply(str) actual = pd.read_excel( basename + read_ext, sheet_name="Sheet1", converters={"StrCol": str} ) tm.assert_frame_equal(actual, expected) no_convert_float = float_expected.copy() no_convert_float["StrCol"] = no_convert_float["StrCol"].apply(str) actual = pd.read_excel( basename + read_ext, sheet_name="Sheet1", convert_float=False, converters={"StrCol": str}, ) tm.assert_frame_equal(actual, no_convert_float) # GH8212 - support for converters and missing values def test_reader_converters(self, read_ext): basename = "test_converters" expected = DataFrame.from_dict( { "IntCol": [1, 2, -3, -1000, 0], "FloatCol": [12.5, np.nan, 18.3, 19.2, 0.000000005], "BoolCol": ["Found", "Found", "Found", "Not found", "Found"], "StrCol": ["1", np.nan, "3", "4", "5"], } ) converters = { "IntCol": lambda x: int(x) if x != "" else -1000, "FloatCol": lambda x: 10 * x if x else np.nan, 2: lambda x: "Found" if x != "" else "Not found", 3: lambda x: str(x) if x else "", } # should read in correctly and set types of single cells (not array # dtypes) actual = pd.read_excel( basename + read_ext, sheet_name="Sheet1", converters=converters ) tm.assert_frame_equal(actual, expected) def test_reader_dtype(self, read_ext): # GH 8212 basename = "testdtype" actual = pd.read_excel(basename + read_ext) expected = DataFrame( { "a": [1, 2, 3, 4], "b": [2.5, 3.5, 4.5, 5.5], "c": [1, 2, 3, 4], "d": [1.0, 2.0, np.nan, 4.0], } ).reindex(columns=["a", "b", "c", "d"]) tm.assert_frame_equal(actual, expected) actual = pd.read_excel( basename + read_ext, dtype={"a": "float64", "b": "float32", "c": str} ) expected["a"] = expected["a"].astype("float64") expected["b"] = expected["b"].astype("float32") expected["c"] = ["001", "002", "003", "004"] tm.assert_frame_equal(actual, expected) msg = "Unable to convert column d to type int64" with pytest.raises(ValueError, match=msg): pd.read_excel(basename + read_ext, dtype={"d": "int64"}) @pytest.mark.parametrize( "dtype,expected", [ ( None, DataFrame( { "a": [1, 2, 3, 4], "b": [2.5, 3.5, 4.5, 5.5], "c": [1, 2, 3, 4], "d": [1.0, 2.0, np.nan, 4.0], } ), ), ( {"a": "float64", "b": "float32", "c": str, "d": str}, DataFrame( { "a": Series([1, 2, 3, 4], dtype="float64"), "b": Series([2.5, 3.5, 4.5, 5.5], dtype="float32"), "c": ["001", "002", "003", "004"], "d": ["1", "2", np.nan, "4"], } ), ), ], ) def test_reader_dtype_str(self, read_ext, dtype, expected): # see gh-20377 basename = "testdtype" actual = pd.read_excel(basename + read_ext, dtype=dtype) tm.assert_frame_equal(actual, expected) def test_reader_spaces(self, read_ext): # see gh-32207 basename = "test_spaces" actual = pd.read_excel(basename + read_ext) expected = DataFrame( { "testcol": [ "this is great", "4 spaces", "1 trailing ", " 1 leading", "2 spaces multiple times", ] } ) tm.assert_frame_equal(actual, expected) # gh-36122, gh-35802 @pytest.mark.parametrize( "basename,expected", [ ("gh-35802", DataFrame({"COLUMN": ["Test (1)"]})), ("gh-36122", DataFrame(columns=["got 2nd sa"])), ], ) def test_read_excel_ods_nested_xml(self, read_ext, basename, expected): # see gh-35802 engine = pd.read_excel.keywords["engine"] if engine != "odf": pytest.skip(f"Skipped for engine: {engine}") actual = pd.read_excel(basename + read_ext) tm.assert_frame_equal(actual, expected) def test_reading_all_sheets(self, read_ext): # Test reading all sheet names by setting sheet_name to None, # Ensure a dict is returned. # See PR #9450 basename = "test_multisheet" dfs = pd.read_excel(basename + read_ext, sheet_name=None) # ensure this is not alphabetical to test order preservation expected_keys = ["Charlie", "Alpha", "Beta"] tm.assert_contains_all(expected_keys, dfs.keys()) # Issue 9930 # Ensure sheet order is preserved assert expected_keys == list(dfs.keys()) def test_reading_multiple_specific_sheets(self, read_ext): # Test reading specific sheet names by specifying a mixed list # of integers and strings, and confirm that duplicated sheet # references (positions/names) are removed properly. # Ensure a dict is returned # See PR #9450 basename = "test_multisheet" # Explicitly request duplicates. Only the set should be returned. expected_keys = [2, "Charlie", "Charlie"] dfs = pd.read_excel(basename + read_ext, sheet_name=expected_keys) expected_keys = list(set(expected_keys)) tm.assert_contains_all(expected_keys, dfs.keys()) assert len(expected_keys) == len(dfs.keys()) def test_reading_all_sheets_with_blank(self, read_ext): # Test reading all sheet names by setting sheet_name to None, # In the case where some sheets are blank. # Issue #11711 basename = "blank_with_header" dfs = pd.read_excel(basename + read_ext, sheet_name=None) expected_keys = ["Sheet1", "Sheet2", "Sheet3"] tm.assert_contains_all(expected_keys, dfs.keys()) # GH6403 def test_read_excel_blank(self, read_ext): actual = pd.read_excel("blank" + read_ext, sheet_name="Sheet1") tm.assert_frame_equal(actual, DataFrame()) def test_read_excel_blank_with_header(self, read_ext): expected = DataFrame(columns=["col_1", "col_2"]) actual = pd.read_excel("blank_with_header" + read_ext, sheet_name="Sheet1") tm.assert_frame_equal(actual, expected) def test_date_conversion_overflow(self, read_ext): # GH 10001 : pandas.ExcelFile ignore parse_dates=False if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") expected = pd.DataFrame( [ [pd.Timestamp("2016-03-12"), "Marc Johnson"], [pd.Timestamp("2016-03-16"), "Jack Black"], [1e20, "Timothy Brown"], ], columns=["DateColWithBigInt", "StringCol"], ) if pd.read_excel.keywords["engine"] == "openpyxl": pytest.xfail("Maybe not supported by openpyxl") result = pd.read_excel("testdateoverflow" + read_ext) tm.assert_frame_equal(result, expected) def test_sheet_name(self, read_ext, df_ref): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") filename = "test1" sheet_name = "Sheet1" if pd.read_excel.keywords["engine"] == "openpyxl": pytest.xfail("Maybe not supported by openpyxl") df1 = pd.read_excel( filename + read_ext, sheet_name=sheet_name, index_col=0 ) # doc with ignore_xlrd_time_clock_warning(): df2 = pd.read_excel(filename + read_ext, index_col=0, sheet_name=sheet_name) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) def test_excel_read_buffer(self, read_ext): pth = "test1" + read_ext expected = pd.read_excel(pth, sheet_name="Sheet1", index_col=0) with open(pth, "rb") as f: actual = pd.read_excel(f, sheet_name="Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) def test_bad_engine_raises(self, read_ext): bad_engine = "foo" with pytest.raises(ValueError, match="Unknown engine: foo"): pd.read_excel("", engine=bad_engine) @tm.network def test_read_from_http_url(self, read_ext): url = ( "https://raw.githubusercontent.com/pandas-dev/pandas/master/" "pandas/tests/io/data/excel/test1" + read_ext ) url_table = pd.read_excel(url) local_table = pd.read_excel("test1" + read_ext) tm.assert_frame_equal(url_table, local_table) @td.skip_if_not_us_locale def test_read_from_s3_url(self, read_ext, s3_resource): # Bucket "pandas-test" created in tests/io/conftest.py with open("test1" + read_ext, "rb") as f: s3_resource.Bucket("pandas-test").put_object(Key="test1" + read_ext, Body=f) url = "s3://pandas-test/test1" + read_ext url_table = pd.read_excel(url) local_table = pd.read_excel("test1" + read_ext) tm.assert_frame_equal(url_table, local_table) @pytest.mark.slow # ignore warning from old xlrd @pytest.mark.filterwarnings("ignore:This metho:PendingDeprecationWarning") def test_read_from_file_url(self, read_ext, datapath): # FILE localtable = os.path.join(datapath("io", "data", "excel"), "test1" + read_ext) local_table = pd.read_excel(localtable) try: url_table = pd.read_excel("file://localhost/" + localtable) except URLError: # fails on some systems import platform platform_info = " ".join(platform.uname()).strip() pytest.skip(f"failing on {platform_info}") tm.assert_frame_equal(url_table, local_table) def test_read_from_pathlib_path(self, read_ext): # GH12655 from pathlib import Path str_path = "test1" + read_ext expected = pd.read_excel(str_path, sheet_name="Sheet1", index_col=0) path_obj = Path("test1" + read_ext) actual = pd.read_excel(path_obj, sheet_name="Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) @td.skip_if_no("py.path") @td.check_file_leaks def test_read_from_py_localpath(self, read_ext): # GH12655 from py.path import local as LocalPath str_path = os.path.join("test1" + read_ext) expected = pd.read_excel(str_path, sheet_name="Sheet1", index_col=0) path_obj = LocalPath().join("test1" + read_ext) actual = pd.read_excel(path_obj, sheet_name="Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) @td.check_file_leaks def test_close_from_py_localpath(self, read_ext): # GH31467 str_path = os.path.join("test1" + read_ext) with open(str_path, "rb") as f: x = pd.read_excel(f, sheet_name="Sheet1", index_col=0) del x # should not throw an exception because the passed file was closed f.read() def test_reader_seconds(self, read_ext): if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") # Test reading times with and without milliseconds. GH5945. expected = DataFrame.from_dict( { "Time": [ time(1, 2, 3), time(2, 45, 56, 100000), time(4, 29, 49, 200000), time(6, 13, 42, 300000), time(7, 57, 35, 400000), time(9, 41, 28, 500000), time(11, 25, 21, 600000), time(13, 9, 14, 700000), time(14, 53, 7, 800000), time(16, 37, 0, 900000), time(18, 20, 54), ] } ) actual = pd.read_excel("times_1900" + read_ext, sheet_name="Sheet1") tm.assert_frame_equal(actual, expected) actual = pd.read_excel("times_1904" + read_ext, sheet_name="Sheet1") tm.assert_frame_equal(actual, expected) def test_read_excel_multiindex(self, read_ext): # see gh-4679 if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") mi = MultiIndex.from_product([["foo", "bar"], ["a", "b"]]) mi_file = "testmultiindex" + read_ext # "mi_column" sheet expected = DataFrame( [ [1, 2.5, pd.Timestamp("2015-01-01"), True], [2, 3.5, pd.Timestamp("2015-01-02"), False], [3, 4.5, pd.Timestamp("2015-01-03"), False], [4, 5.5, pd.Timestamp("2015-01-04"), True], ], columns=mi, ) actual = pd.read_excel( mi_file, sheet_name="mi_column", header=[0, 1], index_col=0 ) tm.assert_frame_equal(actual, expected) # "mi_index" sheet expected.index = mi expected.columns = ["a", "b", "c", "d"] actual = pd.read_excel(mi_file, sheet_name="mi_index", index_col=[0, 1]) tm.assert_frame_equal(actual, expected, check_names=False) # "both" sheet expected.columns = mi actual = pd.read_excel( mi_file, sheet_name="both", index_col=[0, 1], header=[0, 1] ) tm.assert_frame_equal(actual, expected, check_names=False) # "mi_index_name" sheet expected.columns = ["a", "b", "c", "d"] expected.index = mi.set_names(["ilvl1", "ilvl2"]) actual = pd.read_excel(mi_file, sheet_name="mi_index_name", index_col=[0, 1]) tm.assert_frame_equal(actual, expected) # "mi_column_name" sheet expected.index = list(range(4)) expected.columns = mi.set_names(["c1", "c2"]) actual = pd.read_excel( mi_file, sheet_name="mi_column_name", header=[0, 1], index_col=0 ) tm.assert_frame_equal(actual, expected) # see gh-11317 # "name_with_int" sheet expected.columns = mi.set_levels([1, 2], level=1).set_names(["c1", "c2"]) actual = pd.read_excel( mi_file, sheet_name="name_with_int", index_col=0, header=[0, 1] ) tm.assert_frame_equal(actual, expected) # "both_name" sheet expected.columns = mi.set_names(["c1", "c2"]) expected.index = mi.set_names(["ilvl1", "ilvl2"]) actual = pd.read_excel( mi_file, sheet_name="both_name", index_col=[0, 1], header=[0, 1] ) tm.assert_frame_equal(actual, expected) # "both_skiprows" sheet actual = pd.read_excel( mi_file, sheet_name="both_name_skiprows", index_col=[0, 1], header=[0, 1], skiprows=2, ) tm.assert_frame_equal(actual, expected) def test_read_excel_multiindex_header_only(self, read_ext): # see gh-11733. # # Don't try to parse a header name if there isn't one. mi_file = "testmultiindex" + read_ext result = pd.read_excel(mi_file, sheet_name="index_col_none", header=[0, 1]) exp_columns = MultiIndex.from_product([("A", "B"), ("key", "val")]) expected = DataFrame([[1, 2, 3, 4]] * 2, columns=exp_columns) tm.assert_frame_equal(result, expected) def test_excel_old_index_format(self, read_ext): # see gh-4679 filename = "test_index_name_pre17" + read_ext # We detect headers to determine if index names exist, so # that "index" name in the "names" version of the data will # now be interpreted as rows that include null data. data = np.array( [ [None, None, None, None, None], ["R0C0", "R0C1", "R0C2", "R0C3", "R0C4"], ["R1C0", "R1C1", "R1C2", "R1C3", "R1C4"], ["R2C0", "R2C1", "R2C2", "R2C3", "R2C4"], ["R3C0", "R3C1", "R3C2", "R3C3", "R3C4"], ["R4C0", "R4C1", "R4C2", "R4C3", "R4C4"], ] ) columns = ["C_l0_g0", "C_l0_g1", "C_l0_g2", "C_l0_g3", "C_l0_g4"] mi = MultiIndex( levels=[ ["R0", "R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], ["R1", "R_l1_g0", "R_l1_g1", "R_l1_g2", "R_l1_g3", "R_l1_g4"], ], codes=[[0, 1, 2, 3, 4, 5], [0, 1, 2, 3, 4, 5]], names=[None, None], ) si = Index( ["R0", "R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], name=None ) expected = pd.DataFrame(data, index=si, columns=columns) actual = pd.read_excel(filename, sheet_name="single_names", index_col=0) tm.assert_frame_equal(actual, expected) expected.index = mi actual = pd.read_excel(filename, sheet_name="multi_names", index_col=[0, 1]) tm.assert_frame_equal(actual, expected) # The analogous versions of the "names" version data # where there are explicitly no names for the indices. data = np.array( [ ["R0C0", "R0C1", "R0C2", "R0C3", "R0C4"], ["R1C0", "R1C1", "R1C2", "R1C3", "R1C4"], ["R2C0", "R2C1", "R2C2", "R2C3", "R2C4"], ["R3C0", "R3C1", "R3C2", "R3C3", "R3C4"], ["R4C0", "R4C1", "R4C2", "R4C3", "R4C4"], ] ) columns = ["C_l0_g0", "C_l0_g1", "C_l0_g2", "C_l0_g3", "C_l0_g4"] mi = MultiIndex( levels=[ ["R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], ["R_l1_g0", "R_l1_g1", "R_l1_g2", "R_l1_g3", "R_l1_g4"], ], codes=[[0, 1, 2, 3, 4], [0, 1, 2, 3, 4]], names=[None, None], ) si = Index(["R_l0_g0", "R_l0_g1", "R_l0_g2", "R_l0_g3", "R_l0_g4"], name=None) expected = pd.DataFrame(data, index=si, columns=columns) actual = pd.read_excel(filename, sheet_name="single_no_names", index_col=0) tm.assert_frame_equal(actual, expected) expected.index = mi actual = pd.read_excel(filename, sheet_name="multi_no_names", index_col=[0, 1]) tm.assert_frame_equal(actual, expected, check_names=False) def test_read_excel_bool_header_arg(self, read_ext): # GH 6114 msg = "Passing a bool to header is invalid" for arg in [True, False]: with pytest.raises(TypeError, match=msg): pd.read_excel("test1" + read_ext, header=arg) def test_read_excel_skiprows_list(self, read_ext): # GH 4903 if pd.read_excel.keywords["engine"] == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") actual = pd.read_excel( "testskiprows" + read_ext, sheet_name="skiprows_list", skiprows=[0, 2] ) expected = DataFrame( [ [1, 2.5, pd.Timestamp("2015-01-01"), True], [2, 3.5, pd.Timestamp("2015-01-02"), False], [3, 4.5, pd.Timestamp("2015-01-03"), False], [4, 5.5, pd.Timestamp("2015-01-04"), True], ], columns=["a", "b", "c", "d"], ) tm.assert_frame_equal(actual, expected) actual = pd.read_excel( "testskiprows" + read_ext, sheet_name="skiprows_list", skiprows=np.array([0, 2]), ) tm.assert_frame_equal(actual, expected) def test_read_excel_nrows(self, read_ext): # GH 16645 num_rows_to_pull = 5 actual = pd.read_excel("test1" + read_ext, nrows=num_rows_to_pull) expected = pd.read_excel("test1" + read_ext) expected = expected[:num_rows_to_pull] tm.assert_frame_equal(actual, expected) def test_read_excel_nrows_greater_than_nrows_in_file(self, read_ext): # GH 16645 expected = pd.read_excel("test1" + read_ext) num_records_in_file = len(expected) num_rows_to_pull = num_records_in_file + 10 actual = pd.read_excel("test1" + read_ext, nrows=num_rows_to_pull) tm.assert_frame_equal(actual, expected) def test_read_excel_nrows_non_integer_parameter(self, read_ext): # GH 16645 msg = "'nrows' must be an integer >=0" with pytest.raises(ValueError, match=msg): pd.read_excel("test1" + read_ext, nrows="5") def test_read_excel_squeeze(self, read_ext): # GH 12157 f = "test_squeeze" + read_ext actual = pd.read_excel(f, sheet_name="two_columns", index_col=0, squeeze=True) expected = pd.Series([2, 3, 4], [4, 5, 6], name="b") expected.index.name = "a" tm.assert_series_equal(actual, expected) actual = pd.read_excel(f, sheet_name="two_columns", squeeze=True) expected = pd.DataFrame({"a": [4, 5, 6], "b": [2, 3, 4]}) tm.assert_frame_equal(actual, expected) actual = pd.read_excel(f, sheet_name="one_column", squeeze=True) expected = pd.Series([1, 2, 3], name="a") tm.assert_series_equal(actual, expected) def test_deprecated_kwargs(self, read_ext): with tm.assert_produces_warning(FutureWarning, raise_on_extra_warnings=False): pd.read_excel("test1" + read_ext, "Sheet1", 0) pd.read_excel("test1" + read_ext) def test_no_header_with_list_index_col(self, read_ext): # GH 31783 file_name = "testmultiindex" + read_ext data = [("B", "B"), ("key", "val"), (3, 4), (3, 4)] idx = pd.MultiIndex.from_tuples( [("A", "A"), ("key", "val"), (1, 2), (1, 2)], names=(0, 1) ) expected = pd.DataFrame(data, index=idx, columns=(2, 3)) result = pd.read_excel( file_name, sheet_name="index_col_none", index_col=[0, 1], header=None ) tm.assert_frame_equal(expected, result) class TestExcelFileRead: @pytest.fixture(autouse=True) def cd_and_set_engine(self, engine, datapath, monkeypatch): """ Change directory and set engine for ExcelFile objects. """ func = partial(pd.ExcelFile, engine=engine) monkeypatch.chdir(datapath("io", "data", "excel")) monkeypatch.setattr(pd, "ExcelFile", func) def test_excel_passes_na(self, read_ext): with pd.ExcelFile("test4" + read_ext) as excel: parsed = pd.read_excel( excel, sheet_name="Sheet1", keep_default_na=False, na_values=["apple"] ) expected = DataFrame( [["NA"], [1], ["NA"], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) with pd.ExcelFile("test4" + read_ext) as excel: parsed = pd.read_excel( excel, sheet_name="Sheet1", keep_default_na=True, na_values=["apple"] ) expected = DataFrame( [[np.nan], [1], [np.nan], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) # 13967 with pd.ExcelFile("test5" + read_ext) as excel: parsed = pd.read_excel( excel, sheet_name="Sheet1", keep_default_na=False, na_values=["apple"] ) expected = DataFrame( [["1.#QNAN"], [1], ["nan"], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) with pd.ExcelFile("test5" + read_ext) as excel: parsed = pd.read_excel( excel, sheet_name="Sheet1", keep_default_na=True, na_values=["apple"] ) expected = DataFrame( [[np.nan], [1], [np.nan], [np.nan], ["rabbit"]], columns=["Test"] ) tm.assert_frame_equal(parsed, expected) @pytest.mark.parametrize("na_filter", [None, True, False]) def test_excel_passes_na_filter(self, read_ext, na_filter): # gh-25453 kwargs = {} if na_filter is not None: kwargs["na_filter"] = na_filter with pd.ExcelFile("test5" + read_ext) as excel: parsed = pd.read_excel( excel, sheet_name="Sheet1", keep_default_na=True, na_values=["apple"], **kwargs, ) if na_filter is False: expected = [["1.#QNAN"], [1], ["nan"], ["apple"], ["rabbit"]] else: expected = [[np.nan], [1], [np.nan], [np.nan], ["rabbit"]] expected = DataFrame(expected, columns=["Test"]) tm.assert_frame_equal(parsed, expected) def test_excel_table_sheet_by_index(self, read_ext, df_ref): # For some reason pd.read_excel has no attribute 'keywords' here. # Skipping based on read_ext instead. if read_ext == ".xlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") with pd.ExcelFile("test1" + read_ext) as excel: df1 = pd.read_excel(excel, sheet_name=0, index_col=0) df2 = pd.read_excel(excel, sheet_name=1, skiprows=[1], index_col=0) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) with pd.ExcelFile("test1" + read_ext) as excel: df1 = excel.parse(0, index_col=0) df2 = excel.parse(1, skiprows=[1], index_col=0) tm.assert_frame_equal(df1, df_ref, check_names=False) tm.assert_frame_equal(df2, df_ref, check_names=False) with pd.ExcelFile("test1" + read_ext) as excel: df3 = pd.read_excel(excel, sheet_name=0, index_col=0, skipfooter=1) tm.assert_frame_equal(df3, df1.iloc[:-1]) with pd.ExcelFile("test1" + read_ext) as excel: df3 = excel.parse(0, index_col=0, skipfooter=1) tm.assert_frame_equal(df3, df1.iloc[:-1]) def test_sheet_name(self, read_ext, df_ref): # For some reason pd.read_excel has no attribute 'keywords' here. # Skipping based on read_ext instead. if read_ext == ".xlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") filename = "test1" sheet_name = "Sheet1" with pd.ExcelFile(filename + read_ext) as excel: df1_parse = excel.parse(sheet_name=sheet_name, index_col=0) # doc with pd.ExcelFile(filename + read_ext) as excel: df2_parse = excel.parse(index_col=0, sheet_name=sheet_name) tm.assert_frame_equal(df1_parse, df_ref, check_names=False) tm.assert_frame_equal(df2_parse, df_ref, check_names=False) def test_excel_read_buffer(self, engine, read_ext): pth = "test1" + read_ext expected = pd.read_excel(pth, sheet_name="Sheet1", index_col=0, engine=engine) with open(pth, "rb") as f: with pd.ExcelFile(f) as xls: actual = pd.read_excel(xls, sheet_name="Sheet1", index_col=0) tm.assert_frame_equal(expected, actual) def test_reader_closes_file(self, engine, read_ext): with open("test1" + read_ext, "rb") as f: with pd.ExcelFile(f) as xlsx: # parses okay pd.read_excel(xlsx, sheet_name="Sheet1", index_col=0, engine=engine) assert f.closed def test_conflicting_excel_engines(self, read_ext): # GH 26566 msg = "Engine should not be specified when passing an ExcelFile" with pd.ExcelFile("test1" + read_ext) as xl: with pytest.raises(ValueError, match=msg): pd.read_excel(xl, engine="foo") def test_excel_read_binary(self, engine, read_ext): # GH 15914 expected = pd.read_excel("test1" + read_ext, engine=engine) with open("test1" + read_ext, "rb") as f: data = f.read() actual = pd.read_excel(data, engine=engine) tm.assert_frame_equal(expected, actual) def test_excel_high_surrogate(self, engine): # GH 23809 expected = pd.DataFrame(["\udc88"], columns=["Column1"]) # should not produce a segmentation violation actual = pd.read_excel("high_surrogate.xlsx") tm.assert_frame_equal(expected, actual) @pytest.mark.parametrize("filename", ["df_empty.xlsx", "df_equals.xlsx"]) def test_header_with_index_col(self, engine, filename): # GH 33476 idx = pd.Index(["Z"], name="I2") cols = pd.MultiIndex.from_tuples( [("A", "B"), ("A", "B.1")], names=["I11", "I12"] ) expected = pd.DataFrame([[1, 3]], index=idx, columns=cols, dtype="int64") result = pd.read_excel( filename, sheet_name="Sheet1", index_col=0, header=[0, 1] ) tm.assert_frame_equal(expected, result) def test_read_datetime_multiindex(self, engine, read_ext): # GH 34748 if engine == "pyxlsb": pytest.xfail("Sheets containing datetimes not supported by pyxlsb") f = "test_datetime_mi" + read_ext with pd.ExcelFile(f) as excel: actual = pd.read_excel(excel, header=[0, 1], index_col=0, engine=engine) expected_column_index = pd.MultiIndex.from_tuples( [(pd.to_datetime("02/29/2020"), pd.to_datetime("03/01/2020"))], names=[ pd.to_datetime("02/29/2020").to_pydatetime(), pd.to_datetime("03/01/2020").to_pydatetime(), ], ) expected = pd.DataFrame([], columns=expected_column_index) tm.assert_frame_equal(expected, actual)